Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A04
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   1.0  
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    24   3.1  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    23   5.5  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    23   7.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    23   7.2  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    22   9.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     22   9.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    22   9.6  

>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 211 NYKRYLQIVH*FTKKIKHNSEME 143
           NY  Y+Q +  FTKK+  NS  E
Sbjct: 132 NYPEYIQHLPGFTKKVVQNSNPE 154


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 177 SQKKLNIIRRWNNNQKVTIVQE 112
           SQK++  I +W N  + T VQ+
Sbjct: 32  SQKEMQQIAKWTNLSETTFVQK 53


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -3

Query: 207 IKDIYKLYTNSQKKLNIIRRWNNNQKVTIVQERC 106
           ++++Y  + + +++L + +  NN+QK +   E C
Sbjct: 223 LQELYVEHQSKKRRLELFQLTNNHQKNSEACEMC 256


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 IRRWNNNQKVTIVQER 109
           IR WN N K ++V +R
Sbjct: 710 IRDWNTNSKTSMVAQR 725


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 122 LYKKGVEIYFLFKRLIIFIHIFFY 51
           L K G+ I F+F  +++ + + FY
Sbjct: 420 LQKLGISILFVFFIILVCLAVIFY 443


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 117 VQWLPFDYCSISELCLIFF 173
           V W+ F  CSI  + L FF
Sbjct: 890 VYWMYFKSCSIGLILLYFF 908


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 186 YTNSQKKL-NIIRRWNNNQKVTIVQERC*NLFPF*KVNYIHS 64
           +T+SQ+K  N I       + ++V+    N FP  K +YI++
Sbjct: 629 FTDSQEKAPNAIGNDLERNRTSLVKIELENAFPLVKESYINT 670


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 107 VEIYFLFKRLIIFIHIFFYQW 45
           V +YF F  L++FI + + +W
Sbjct: 7   VFVYFYFFPLLVFITLQYPRW 27


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 VIIKDIYKLYTNSQKKLNIIRRWNNNQKV 127
           ++ +D YKL+ N+    +I   W   QK+
Sbjct: 203 LLYEDAYKLFKNATGAPSIFVHWTYIQKL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 968,190
Number of Sequences: 5004
Number of extensions: 17989
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)