Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A04
         (215 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    29   0.45 
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    25   5.5  
Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    25   9.7  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 124 HCTRKVLKFISFLKG*LYSFIFFFT 50
           HC R ++ F+ FLKG    + F FT
Sbjct: 534 HCKRHLIDFVDFLKGTKPDYAFLFT 558


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 201  DIYKLYTNSQKKLNIIRRWNNNQKVTIVQERC*NLF 94
            D++ +YT++Q+ +N+  + +   K+   QE   NLF
Sbjct: 1829 DLHTIYTDTQQSVNLDVQKSAKLKIEHYQEETKNLF 1864


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 201  DIYKLYTNSQKKLNIIRRWNNNQKVTIVQERC*NLF 94
            D++ +YT++Q+ +N+  + +   K+   QE   NLF
Sbjct: 1846 DLHTIYTDTQQSVNLDVQKSAKLKIEHYQEETKNLF 1881


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 118 YNGYLLIIVPSPNYV*FFL*ISVQF 192
           +NG   +IVP+P+ +  +L +S+QF
Sbjct: 391 FNGNSNVIVPAPDSILSYLELSIQF 415


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 201  DIYKLYTNSQKKLNIIRRWNNNQKVTIVQERC*NLF 94
            D++ +YT++Q+ +N+  + +   K+   QE   NLF
Sbjct: 1829 DLHTIYTDTQQSVNLDVQKSAKLKIEHYQEETKNLF 1864


>Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical
           protein H32K16.1 protein.
          Length = 481

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 125 PLYKKGVEIYFLFKRLIIFIHIFFYQW 45
           P++KK  +++  +++LII + +F   W
Sbjct: 436 PVFKKQGDMFKFYQKLIINVFLFVLGW 462


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 48  LVKKNMNEYN*PFKKEINFNTFLVQWLPFDYCSISELCLIFFVN*CTI 191
           +VK+    YN     E+N+ T +   L FD+  I+E    +F N  TI
Sbjct: 183 IVKEVDISYNPECYGELNYWTVVPSQLLFDFPKINEYWRFYFRNIFTI 230


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 114 LVQWLPFDYCSISELCLIFFVN*CTICKY 200
           ++Q+LP +   + E+C +  +  C I KY
Sbjct: 49  MIQFLPTENTKMKEICPVNQIEECVIGKY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,206,156
Number of Sequences: 27780
Number of extensions: 95877
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)