Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A03
         (102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    50   3e-08
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    50   5e-08
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    22   9.4  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 50.4 bits (115), Expect = 3e-08
 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
 Frame = +2

Query: 2   DKLKR---NWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           D+ KR   +WRKPRGID+ VRRRF+G   MP IGYG
Sbjct: 20  DRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYG 55


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 49.6 bits (113), Expect = 5e-08
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +2

Query: 5   KLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           ++  +WRKPRGID+ VRRRF+G   MP IGYG
Sbjct: 24  RVGESWRKPRGIDSCVRRRFRGTISMPKIGYG 55


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 9   LRGTGVNREVSTTEY 53
           + GTGVN+  ST  Y
Sbjct: 426 MEGTGVNKNASTGRY 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,956
Number of Sequences: 5004
Number of extensions: 3233
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)