Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A03
         (102 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    57   2e-09
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     57   2e-09
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    57   2e-09
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    54   2e-08
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    26   3.6  
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304...    25   8.3  

>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +2

Query: 8   LKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 29  LKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +2

Query: 8   LKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 29  LKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +2

Query: 8   LKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 351 LKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 381


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +2

Query: 17  NWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYG 126


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 82  HQVLTLEAPTYSVVDTSRFTPVPLK 8
           HQ++   AP Y+ VD +   P+PL+
Sbjct: 74  HQLVPFWAPFYTSVDQTTSPPIPLR 98


>10_08_0943 +
           21728294-21728675,21728767-21728840,21729469-21730443,
           21730617-21730683,21730765-21730827,21731001-21731064,
           21731162-21731255,21731352-21731435,21731523-21731612,
           21731708-21731735,21732117-21732596,21732679-21732740,
           21732820-21732929,21733014-21733101,21733228-21733557,
           21733782-21733904
          Length = 1037

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 94  TNVGHQVLTLEAPTYSVV 41
           T V H VL L+APTY  +
Sbjct: 392 TKVEHAVLPLQAPTYGCI 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,748
Number of Sequences: 37544
Number of extensions: 20737
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)