Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A03
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    52   7e-08
AC084197-29|AAM44391.1|   88|Caenorhabditis elegans Hypothetical...    25   7.2  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 51.6 bits (118), Expect = 7e-08
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +2

Query: 17  NWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           +WRKP+GIDNRVRRRF+G   MP IG+G
Sbjct: 33  SWRKPKGIDNRVRRRFRGMRAMPTIGHG 60


>AC084197-29|AAM44391.1|   88|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.35 protein.
          Length = 88

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 14  RNWRKPRGIDNRVRRRFKGQYLMP 85
           R W++   ID R   +FK  Y  P
Sbjct: 54  RYWKRAHNIDTRALNQFKNCYFSP 77


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
          protein C10F3.4b protein.
          Length = 482

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2  DKLKRNWRKPRGIDNRVRRR 61
          D+L RN R+PR ID    R+
Sbjct: 10 DRLPRNMRRPRPIDKMPMRK 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,380
Number of Sequences: 27780
Number of extensions: 17282
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)