Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A03
         (102 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    75   1e-16
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   4.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   4.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    18   9.9  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 74.5 bits (175), Expect = 1e-16
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 5   KLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 100
           KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 29  KLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 5  KLKRNWRKPR 34
          K KR+W +PR
Sbjct: 42 KRKRSWSRPR 51


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 5   KLKRNWRKPR 34
           K KR+W +PR
Sbjct: 163 KRKRSWSRPR 172


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 88  VGHQVLTLEAPTYSVVDTSRFT 23
           +GH ++   AP+  VV  S F+
Sbjct: 199 IGHHLIQTFAPSTLVVMLSWFS 220


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 69  PLKRLRTLLSIPL 31
           P KR+R + S+PL
Sbjct: 641 PPKRIRKMPSMPL 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,437
Number of Sequences: 438
Number of extensions: 190
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)