Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A02
(216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.063
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 0.34
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 25 1.4
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 1.4
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 1.4
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 24 2.4
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 24 2.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 23 4.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 23 4.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 23 5.5
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 23 5.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 23 7.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 23 7.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 7.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 22 9.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 22 9.6
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.063
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +1
Query: 103 DYKDPISEKFNAKLYN---FKTTKISDIID--MEKDTNDGT 210
DY DP ++ FN ++YN F + + D I+ M T DGT
Sbjct: 317 DYSDPNNKTFNPEIYNDTDFYQSLLKDFINSRMADSTRDGT 357
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 0.34
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 22 LITMSSKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDM 186
+ITM S + + E +LL +S++FN KLY + ++ ++D+
Sbjct: 658 MITMQSLYYCPIELIENLLRAITSLLPKNTSNLSDEFNTKLYRLNSILLTVVMDI 712
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 25 ITMSSKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNF 153
I + +E + +S ++SN L+ YK F+ K+Y+F
Sbjct: 115 IPQKALNIYEKQRSLFSESISNYLVLQYKLRYFPVFDLKIYDF 157
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 208 FHHSYLFPCLLYQIFLLF*SYIILH*ISQILDLCNHLIMY 89
+ + +L P + F S ++L +S + LCNH++MY
Sbjct: 316 WEYDFLVPSKIQDYFYDVHS-LLLKNLSSKIKLCNHILMY 354
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 11 LFKF**RCHRNVFLKINTVNILLMSLIHY*MITKI 115
+F F CH+N F IN V +++ M T I
Sbjct: 211 VFVFGFTCHQNAFSVINEVRNFSQGFVNFTMFTAI 245
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 41 NVFLKINTVNILLMSLIHY*MITKIQYLRNLMQNYITSKQQKYLI 175
NVF+K+ ++ILL +++ + + + + + K KYLI
Sbjct: 496 NVFVKMAELSILLQNVLQHLFNARAVMTMSKNRRTVAQKISKYLI 540
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 58 KYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTNDGT 210
++C YS SN+ L +DPI++ F + D + D +G+
Sbjct: 237 RWCLYSIADSNSYLRYNRDPIAKLIGLVEAYFSPDTVDDEFTLAIDAINGS 287
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 58 KYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTN 201
K+ E +A +L+D ++ F++++ F+T K+ + + + DTN
Sbjct: 390 KFSEENARGWCNVLDDESSQQNQNFSSEIGIFQTVKLWYLNESKFDTN 437
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 52 ENKYCEYSANVSNTLLNDYK-DP-ISEKFNAKLYNFKTTKISDIIDMEKDTNDG 207
+N Y E++ N L++D+K +P ++E + + K+ + + + + DG
Sbjct: 73 DNNYVEFTEKEINELVDDWKPEPLVAELTDVEKLELKSIPVLESVHLHTKLIDG 126
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 31 MSSKRFFENKYCEYSANVSNTLLN 102
+ ++ +ENK EY N++N N
Sbjct: 12 LDTEAIYENKENEYQTNITNETSN 35
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +1
Query: 73 SANVSNTLLNDYKDPISEK 129
++ V+NT+L+ Y+D I+E+
Sbjct: 9 TSGVANTVLSKYQDSIAEE 27
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 58 KYCEYSANVSNTLLNDYKDPISEKFNAK 141
K C S N ++ +L+DY KF +K
Sbjct: 767 KTCTTSLNDADIILSDYISDQKSKFESK 794
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 106 YKDPISEKFNAKLY 147
+K P KFNAKLY
Sbjct: 201 FKGPNYNKFNAKLY 214
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 128 NLMQNYITSKQQKYL 172
+LM+ Y+T +Q KYL
Sbjct: 1459 DLMEEYLTFRQYKYL 1473
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 88 NTLLNDYKDPISEKFNAKLYN 150
+TLLN YKD I+ + L N
Sbjct: 511 STLLNQYKDEINREAAYNLAN 531
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 91 TLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
T L +KD + +K++ +K KI ID+E++
Sbjct: 80 TCLKSFKDFMLVAAGSKIFAYKRGKIIWDIDVEQE 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,096
Number of Sequences: 5004
Number of extensions: 12322
Number of successful extensions: 47
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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