Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A02
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0317 + 3486065-3486072,3489270-3489342,3490742-3490864,349...    27   1.6  
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456...    27   2.1  
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057...    26   3.6  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    25   6.3  

>10_01_0317 +
           3486065-3486072,3489270-3489342,3490742-3490864,
           3490953-3491060
          Length = 103

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 34  SSKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTNDGT 210
           S ++  E+   ++   + ++LL  Y+D +      KLY  KT K S    M+KDT   T
Sbjct: 26  SKRKRTESTVVDFKNKLDSSLLEIYRDNVLIGMKRKLYCHKTKKNS----MKKDTTYDT 80


>04_04_0028 -
           22243272-22243577,22244564-22244713,22244919-22245656,
           22247233-22247331,22247541-22247933,22248806-22248961
          Length = 613

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 37  SKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDI 177
           S+R  +NKYC+   N    +L +Y+  + E F  K + F +  + ++
Sbjct: 261 SRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIK-FEFDSILVDNL 306


>07_01_1089 +
           10004773-10004831,10004924-10005033,10005631-10005749,
           10005833-10005930,10006834-10006921,10006993-10007127,
           10007211-10007313,10007506-10007618,10007821-10007868
          Length = 290

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  EYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           E +A +   + ++ K+ + +     +YN+   +   I++MEKD
Sbjct: 151 EKAAQLEKNIESELKERLKKGVYGDIYNYPFKEFDTILEMEKD 193


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 184  CLLYQIFLLF*SYIILH*ISQILDLCNHLIMY*RH*QNIHSIYFQ-KNVSMTSLSKLK*C 8
            C  ++ FLL    + L  +   +D  N+ ++   H Q+ H +YF+ K++ + + ++L   
Sbjct: 923  CAAHRCFLLRLLPVTLLVMESAVDTTNNFLVAILHPQHSHELYFRIKHILVQTKAELHDA 982

Query: 7    LV 2
            LV
Sbjct: 983  LV 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,711
Number of Sequences: 37544
Number of extensions: 52301
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)