Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A02
         (216 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057228-1|AAH57228.1|  474|Homo sapiens group-specific componen...    29   3.6  
S67480-1|AAB29423.1|  474|Homo sapiens vitamin D-binding protein...    28   4.7  
M12654-1|AAA52173.1|  474|Homo sapiens GC protein.                     28   4.7  
L10641-1|AAA61704.1|  474|Homo sapiens vitamin D-binding protein...    28   4.7  
AK223458-1|BAD97178.1|  474|Homo sapiens vitamin D-binding prote...    28   4.7  

>BC057228-1|AAH57228.1|  474|Homo sapiens group-specific component
           (vitamin D binding protein) protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 49  FENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           F +K  E  A+ S     +YK  ++E+  AKL +   T+++ +++   D
Sbjct: 399 FIDKGQELCADYSENTFTEYKKKLAERLKAKLPDATPTELAKLVNKRSD 447


>S67480-1|AAB29423.1|  474|Homo sapiens vitamin D-binding
           protein/group specific component protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 49  FENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           F +K  E  A+ S     +YK  ++E+  AKL     T+++ +++   D
Sbjct: 399 FIDKGQELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSD 447


>M12654-1|AAA52173.1|  474|Homo sapiens GC protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 49  FENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           F +K  E  A+ S     +YK  ++E+  AKL     T+++ +++   D
Sbjct: 399 FIDKGQELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSD 447


>L10641-1|AAA61704.1|  474|Homo sapiens vitamin D-binding protein
           protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 49  FENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           F +K  E  A+ S     +YK  ++E+  AKL     T+++ +++   D
Sbjct: 399 FIDKGQELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSD 447


>AK223458-1|BAD97178.1|  474|Homo sapiens vitamin D-binding protein
           precursor variant protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 49  FENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKD 195
           F +K  E  A+ S     +YK  ++E+  AKL     T+++ +++   D
Sbjct: 399 FIDKGQELCADYSENTFTEYKKKLAERLKAKLPEATPTELAKLVNKRSD 447


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,407,340
Number of Sequences: 237096
Number of extensions: 299100
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 76,859,062
effective HSP length: 50
effective length of database: 65,004,262
effective search space used: 1365089502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)