Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A02
(216 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 30 0.19
Z81076-8|CAB03056.1| 385|Caenorhabditis elegans Hypothetical pr... 29 0.34
Z11115-15|CAA77456.1| 316|Caenorhabditis elegans Hypothetical p... 26 3.2
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 26 4.2
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 26 4.2
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 25 5.5
Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41277-1|AAA82472.1| 238|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z92973-6|CAI79258.1| 440|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 52 ENKYCEYSANVSNTL--LNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTNDGTGY 216
+ +Y E V L LNDYKD +++K++ + + K+ +++M ++T + +
Sbjct: 769 DEEYDEALNRVKEALNELNDYKDSVAKKYSCSIKFVDSGKVKYLLEMPENTKVSSSF 825
>Z81076-8|CAB03056.1| 385|Caenorhabditis elegans Hypothetical
protein F35C5.7 protein.
Length = 385
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 19 VLITMSSKRFFENKYCEYSANVSNTLLN------DYKDPISEKFNAKLYNFKTTKISDI 177
V++ +SK E +AN++ T + DY DP S + + YN + T ++D+
Sbjct: 35 VIVVDNSKGMTNEGITEVAANIATTFASGPRIGTDYSDPRSTRLSILTYNSEATVVADL 93
>Z11115-15|CAA77456.1| 316|Caenorhabditis elegans Hypothetical
protein ZK637.11 protein.
Length = 316
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 61 YCEYSANVSNTLLNDYKDPISEKFNAKLY 147
YCEYS T+ N+ ++ + K N+ +Y
Sbjct: 188 YCEYSQKRGPTMANNLRE-VDRKLNSNIY 215
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 112 DPISEKFNAKLYNFKTTKISDIIDM 186
D I EK AKL F+T I+D I M
Sbjct: 703 DQIQEKSRAKLSAFRTKMINDCIAM 727
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 82 VSNTLLNDYKDPISEKFNAKLYNFKTTKI 168
V++TLLN + +P ++F +K+Y K+
Sbjct: 1828 VNSTLLNKFYNPTVDRFYSKIYWISQGKV 1856
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 193 LFPCLLYQIFLLF*SYIILH 134
+FPC ++++FLLF + +H
Sbjct: 30 VFPCFIFRVFLLFQVFSRVH 49
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 193 LFPCLLYQIFLLF*SYIILH 134
+FPC ++++FLLF + +H
Sbjct: 30 VFPCFIFRVFLLFQVFSRVH 49
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 193 LFPCLLYQIFLLF*SYIILH 134
+FPC ++++FLLF + +H
Sbjct: 30 VFPCFIFRVFLLFQVFSRVH 49
>Z81076-7|CAB03058.1| 411|Caenorhabditis elegans Hypothetical
protein F35C5.6 protein.
Length = 411
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +1
Query: 19 VLITMSSKRFFENKYCEYSANV------SNTLLNDYKDPISEKFNAKLYNFKTTKISDI 177
V++ +SK E +AN+ + N Y DP S + YN ++T ++D+
Sbjct: 62 VVVVDNSKGMTNEGITEIAANIVTVFGNGTRIGNQYSDPRSTRLGLVTYNGRSTIVADL 120
>U41277-1|AAA82472.1| 238|Caenorhabditis elegans Hypothetical
protein C06E4.5 protein.
Length = 238
Score = 25.0 bits (52), Expect = 7.3
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 25 ITMSSKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISD---IIDMEKD 195
I+++SK K C+YS +V + +D KD I + F +L K T+ SD + D+ K
Sbjct: 109 ISINSKGILV-KVCDYSESVIDGSADDVKDQIPD-FEKEL--LKKTRDSDRKVVEDLFKG 164
Query: 196 TNDGTGY 216
+D +
Sbjct: 165 MSDAKSF 171
>Z92973-6|CAI79258.1| 440|Caenorhabditis elegans Hypothetical
protein Y6G8.5 protein.
Length = 440
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 79 NVSNTLLNDYKDPISEKFNAKLYN 150
++SNT L+D+K+ + ++ N+ + N
Sbjct: 99 DISNTFLSDFKEMLQKRDNSLVLN 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,197,828
Number of Sequences: 27780
Number of extensions: 62471
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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