Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A02
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   0.72 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   2.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   6.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 0.72
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +1

Query: 19  VLITMSSKRFFENKYCEYSANVSNTLLNDYKDPISEKFNAKLYN 150
           ++ ++S+K    N   +Y+ N +N   N+Y +  +       YN
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYN 357


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl
          cyclase beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 1.3
 Identities = 6/21 (28%), Positives = 16/21 (76%)
 Frame = -2

Query: 92 VLETLAEYSQYLFSKKRFDDI 30
          +LE ++EY + ++ + R+++I
Sbjct: 5  ILENMSEYIRQVYGEDRWEEI 25


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 9/47 (19%), Positives = 19/47 (40%)
 Frame = +1

Query: 64  CEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTND 204
           CE    +   L  +  DP   ++  K+Y     +  +++   +D  D
Sbjct: 229 CEDMRFLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 9/47 (19%), Positives = 19/47 (40%)
 Frame = +1

Query: 64  CEYSANVSNTLLNDYKDPISEKFNAKLYNFKTTKISDIIDMEKDTND 204
           CE    +   L  +  DP   ++  K+Y     +  +++   +D  D
Sbjct: 229 CEDMRFLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLD 275


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 94  LLNDYKDPISEKFNAKLYNFKTTKISD 174
           L N+  D I       LYN  T ++SD
Sbjct: 366 LRNNSIDRIESNAFLPLYNLHTLELSD 392


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 127 SQILDLCNHLIMY 89
           S++LDLC   +M+
Sbjct: 494 SRLLDLCTKFLMH 506


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 80   LAEYSQYLFSKKRFDDI 30
            +A YSQ LFS    D++
Sbjct: 1349 IALYSQGLFSLSEIDNL 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,697
Number of Sequences: 438
Number of extensions: 790
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)