Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A01
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    26   0.76 
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   1.8  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    24   3.1  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    24   3.1  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    23   5.4  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    23   7.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    23   7.1  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     22   9.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    22   9.4  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  DTFETSISHALVELETNSDLKAQLRELYITNAKEIEL 172
           +T+E  I   L++L + S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 4   IRHEVQDEYENPQSGCYRTRHLRD 75
           I H + D + NPQS   + + LRD
Sbjct: 141 IAHRITDLHGNPQSHIQKLKSLRD 164


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -1

Query: 153 LVMYSSRS*AFRSELVSSSTRACEIEVSKVSGSI--APAL---RIFVLILNLVPN 4
           L+ YS  S     ELV S+ + C++EV  + GS    P L   RI V+ +N + N
Sbjct: 97  LLPYSKES-LDSQELVHSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNELSN 150


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 172 KFNFLGIGNVQFPQLSLQVRVSLKFNKSMRDRSLEGVGFYSTRFED-FRTHLE 17
           K+N   I   Q P L+ +     K+N     RS  G      + ++ FR  LE
Sbjct: 20  KYNIYNIARKQLPALNNRTLYQKKWNAKKETRSYHGPQLREYQLKNAFRPKLE 72


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 38  LKAGAIEPDTFETSISHALVELETNSDLKAQLRELYITNAKEIE 169
           L   A+E  T E  + +  V +   S LKA +++  +    E++
Sbjct: 92  LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   GTRFKMSTKILKAGAIEPDTFETSISH 88
           G +FK STK+L A  +  D+ E  I +
Sbjct: 272 GIKFKTSTKLLSA-KVNGDSVEVEIEN 297


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 82  DRSLEGVGFYSTRFEDFRTHLE 17
           + S EG+GF     ED R H E
Sbjct: 873 ESSREGLGFRELIPEDIRAHFE 894


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 175 MKFNFLGIGNVQFPQLSLQVRVSLKFN 95
           +KF  L +G V+ P +   +RV   F+
Sbjct: 125 LKFYGLHLGEVRLPMIETDIRVPETFS 151


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 237 WIFWNAFSLGIG 202
           W+  N FS+GIG
Sbjct: 662 WLLHNGFSIGIG 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,330
Number of Sequences: 5004
Number of extensions: 14595
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)