Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A01
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 60 3e-10
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 42 5e-05
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 0.69
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 0.69
07_02_0033 + 12075384-12075869 28 1.2
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 1.2
04_03_0166 + 12175952-12176045,12176080-12176762 27 1.6
10_01_0175 + 1959565-1960431,1960886-1960955,1961537-1961704,196... 27 2.1
07_03_0050 + 12817959-12818281,12818604-12818688,12819144-128192... 27 2.1
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 27 2.1
06_03_0837 + 25261890-25261923,25262135-25262186,25262410-252626... 27 2.8
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 26 3.7
03_02_0488 - 8824980-8825267,8825364-8827775 26 3.7
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 26 3.7
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 26 4.9
01_06_0137 + 26855468-26856358 26 4.9
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 25 6.5
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 25 6.5
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 25 6.5
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 25 6.5
04_01_0280 - 3757107-3758180 25 8.5
04_01_0212 - 2654691-2656976 25 8.5
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Frame = +2
Query: 32 KILKAGAIEPDTFETSISHALVELET-NSDLKAQLRELYITNAKEIELH-NKKSIIIYVP 205
KI K +EP FE S++ A +LE N +LK++L++LYI NA ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 206 MPKLNAFQKI 235
AF+KI
Sbjct: 67 YRLRKAFKKI 76
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 42.3 bits (95), Expect = 5e-05
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +2
Query: 89 ALVELET-NSDLKAQLRELYITNAKEIELH-NKKSIIIYVPMPKLNAFQKI 235
A +LE N +LK+ L++LYI A +++L N+K++IIYVP A++KI
Sbjct: 39 AFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKI 89
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +2
Query: 92 LVELETNSDLKAQLRELYITNAKEIELHNKKSIIIYVPMPKLNAF 226
LVE+ D ++ + Y+ + L++K +++Y+ K++ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 92 LVELETNSDLKAQLRELYITNAKEIELHNKKSIIIYVPMPKLNAF 226
LVE+ D ++ + Y+ + L +K ++IY+ K++ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>07_02_0033 + 12075384-12075869
Length = 161
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 4 IRHEVQDEYENPQSGCYRTR---HLRDFDLACSC 96
IR E+ ENP SG HLRDF+ CSC
Sbjct: 32 IRPELSMVRENPFSGFDLENPYHHLRDFEQVCSC 65
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 92 LVELETNSDLKAQLRELYITNAKEIELHNKKSIIIYVPMPKLNAF 226
LVE+ D ++ + Y+ + L +K +++Y+ K++ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>04_03_0166 + 12175952-12176045,12176080-12176762
Length = 258
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 22 DEYENPQSGCYRTRHLRDFDLACSC 96
++YENP + HLRDF+ CSC
Sbjct: 29 NQYENPYN------HLRDFEQVCSC 47
>10_01_0175 +
1959565-1960431,1960886-1960955,1961537-1961704,
1962570-1962676
Length = 403
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 64 HLRDFDLACSC 96
HLRDF+L CSC
Sbjct: 57 HLRDFELVCSC 67
>07_03_0050 +
12817959-12818281,12818604-12818688,12819144-12819213,
12819900-12819970,12820417-12820440
Length = 190
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 64 HLRDFDLACSC 96
HLRDF+L CSC
Sbjct: 18 HLRDFELVCSC 28
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 32 KILKAGAIEPDTFETSISHALVELETNS--DLKAQLRELYITNAKEIELHNKK 184
K+L+ ++PD E H LVE ET D A + E +T E+ +K+
Sbjct: 146 KLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLTPVDEVLNEHKR 198
>06_03_0837 +
25261890-25261923,25262135-25262186,25262410-25262645,
25263091-25263158,25263176-25263380,25263435-25263785,
25264566-25264633,25264736-25264797,25265615-25265708
Length = 389
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 97 NKSMRDRSLEGVGFYSTRFEDFRTHLEPR 11
N S R GV +Y E+FR+H+E R
Sbjct: 181 NDSNRRVEAAGVNYYDLTEENFRSHVEER 209
>05_01_0318 -
2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 50 AIEPDTFETSISHALVELE 106
A++ D F TSI H L ELE
Sbjct: 154 ALKEDRFNTSIQHRLTELE 172
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 41 KAGAIEPDTFETSISHALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIY-VPMPKL 217
++ + + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 218 NAFQKI 235
++ +++
Sbjct: 359 DSSEEL 364
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 89 ALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIY 199
A++E+E N DL + L T E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 KILKAGAIEPDTFET--SISHALVELETNSDLKAQLRELYITNAKEIELHN 178
K LK +E D E IS AL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>01_06_0137 + 26855468-26856358
Length = 296
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 132 CGNCTLPMPRKLN 170
CG C LP+PRK++
Sbjct: 256 CGPCILPLPRKIH 268
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 26 STKILKAGAIEPDTFETSISHALVELETNSDLKAQLRELYITNAKEIELHNKKSIII 196
S+K+L AG + DTF LV+L +S + Q+ L + L +KSI++
Sbjct: 426 SSKVLSAGKLSCDTFIA----PLVQLLYDSSMSVQVAALGAICNIAVNLTPRKSILL 478
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 119 LKAQLRELYITNAKEIELHNKKSIIIYVPMPK 214
L+ + + Y NA+ ++ N ++I I++P PK
Sbjct: 242 LREAVADGYENNARPLQKVNNRNISIFIPDPK 273
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 83 SHALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIYVPMP 211
S LVE + L A+L+ + N + + +++++IY MP
Sbjct: 407 SQGLVEFKNEIQLIAKLQHTNLVNLRGCCIQGEENLLIYEYMP 449
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +1
Query: 31 ENPQSGCYRTR---HLRDFDLACSC 96
ENP SG HLRDF+ CSC
Sbjct: 42 ENPFSGFDLENPYHHLRDFEQVCSC 66
>04_01_0280 - 3757107-3758180
Length = 357
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 64 HLRDFDLACSC 96
HLR+F+L CSC
Sbjct: 57 HLREFELLCSC 67
>04_01_0212 - 2654691-2656976
Length = 761
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 71 ETSISHALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIY 199
+ ++H LVE+E LK LR + L +K+ I+Y
Sbjct: 587 KVKLAHRLVEMEQKPSLKNALRSKWRPGVSGHWLRPEKASILY 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,899,531
Number of Sequences: 37544
Number of extensions: 90412
Number of successful extensions: 223
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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