Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A01
(240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 79 4e-16
Z81120-7|CAB03343.2| 274|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr... 27 1.3
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr... 27 1.3
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 27 1.8
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 27 2.3
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 27 2.3
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF003383-4|ABO16469.1| 204|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81509-3|CAB04156.1| 532|Caenorhabditis elegans Hypothetical pr... 25 7.2
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 79.0 bits (186), Expect = 4e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +2
Query: 32 KILKAGAIEPDTFETSISHALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIYVPMP 211
K+LK+ E +S AL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 212 KLNAFQKI 235
+L AF KI
Sbjct: 67 QLKAFHKI 74
>Z81120-7|CAB03343.2| 274|Caenorhabditis elegans Hypothetical
protein T12D8.3 protein.
Length = 274
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 47 GAIEPDTFETSISHALVELETNSDLK--AQLRELYITNAKEIELHNKKSII 193
G IEP+ F+ ++ H +LET ++ K A +R I + + L N+ II
Sbjct: 133 GVIEPEMFDDAVVHPPTKLETETEKKWFAAMRVSDIDTMRTL-LRNEPEII 182
>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
protein C01B9.1b protein.
Length = 1671
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 80 ISHALVELETN-SDLKAQLRELYITNAKEIELHNKKSIIIYVPMPKLNAFQKI 235
I+ +EL+T + K +L+E+ +TNAKE + +S + VP+ L F +
Sbjct: 799 IASETIELKTTVQEAKLKLKEINVTNAKEFK---AESFQLSVPIKLLLHFSNV 848
>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
protein C01B9.1a protein.
Length = 1601
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 80 ISHALVELETN-SDLKAQLRELYITNAKEIELHNKKSIIIYVPMPKLNAFQKI 235
I+ +EL+T + K +L+E+ +TNAKE + +S + VP+ L F +
Sbjct: 729 IASETIELKTTVQEAKLKLKEINVTNAKEFK---AESFQLSVPIKLLLHFSNV 778
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 86 HALVELETNSDLKAQLRELYITNAKEI 166
H LV +ET++ A + E +I AKEI
Sbjct: 141 HGLVFMETSAKTAANVEEAFIDTAKEI 167
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 91 SMRDRSLEGVGFYSTRFEDFRTHLE 17
S+++ + E + FY+TRF F HL+
Sbjct: 263 SIQEAATEILRFYTTRFSSFNIHLD 287
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 91 SMRDRSLEGVGFYSTRFEDFRTHLE 17
S+++ + E + FY+TRF F HL+
Sbjct: 266 SIQEAATEILRFYTTRFSSFNIHLD 290
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 59 PDTFETSISHALVELETNSDLKAQLRELYITNAKEIELHNKKSIIIY--VPMPKLNAFQK 232
PD ++ + S ++ + N DL + R I A + E+H ++ Y +P +NA++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 233 I 235
I
Sbjct: 99 I 99
>AF003383-4|ABO16469.1| 204|Caenorhabditis elegans Hypothetical
protein ZC250.5 protein.
Length = 204
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 68 FETSISHALVELETNSDLKAQLRELYITNAKEIELH 175
FET + V ++ N LK L EL++ A+ +H
Sbjct: 38 FETGVPIGRVIIQMNEALKKNLTELFVKTARGEFVH 73
>Z81509-3|CAB04156.1| 532|Caenorhabditis elegans Hypothetical
protein F21A3.5 protein.
Length = 532
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 98 ELETNSDLKAQ-LRELYITNAKEIELHNKKSIIIYVP 205
++ +SD + + + E+++ A+ I+LH K +IY P
Sbjct: 182 DITVSSDKRHRAIDEIHLRTAESIDLHWKTGDLIYAP 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,185,034
Number of Sequences: 27780
Number of extensions: 83519
Number of successful extensions: 237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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