Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P24
(262 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 103 5e-24
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 1e-10
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 55 1e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 47 5e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 46 8e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 1e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 46 1e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 1e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 45 2e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 4e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 7e-04
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 9e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.005
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.005
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.033
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.044
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 30 0.058
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.10
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 28 0.24
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 0.31
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 0.54
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 0.72
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 1.7
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 24 2.9
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 3.8
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 24 3.8
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 24 3.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 5.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 23 5.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 23 5.1
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 23 6.7
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 8.8
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 23 8.8
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 23 8.8
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 23 8.8
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 23 8.8
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 23 8.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 103 bits (246), Expect = 5e-24
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 187
RL+ EF+ FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 188 AQRKEDCKAHLTSQYMQR 241
AQRKE ++ L +Q R
Sbjct: 439 AQRKEVRRSQLEAQIQAR 456
Score = 52.0 bits (119), Expect = 1e-08
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Frame = +2
Query: 8 RRLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 184
+ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +NG ++ K +YV
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Query: 185 --LAQRK-----EDCKAHLTSQYMQRM 244
+++R+ E KA+ T+ Y++ +
Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNL 268
Score = 51.6 bits (118), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 FAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 202
F FG ITS ++ + + +GFGFV +++ E A KAV E+N + K LYV AQ+K
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340
Query: 203 DCKAHLTSQYMQ 238
+ + L +Y Q
Sbjct: 341 EREEELRKRYEQ 352
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 58.4 bits (135), Expect = 1e-10
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 5 TRRLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 178
T++L + F+ FG I S + SKG+GFV FS P EA +A+ +NG + G K L+
Sbjct: 434 TQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLF 493
Query: 179 VALAQRKEDCKAHLTSQYMQ 238
V A+++ED K L++ + Q
Sbjct: 494 VNYAEKREDRKKRLSAIFSQ 513
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 55.2 bits (127), Expect = 1e-09
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 11 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 184
+L F+PFG+I S+ + G SKG+GFV F E A +A +NG +VG K ++V
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVC 458
Query: 185 LAQRKED 205
A+RK D
Sbjct: 459 FAERKSD 465
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.8 bits (106), Expect = 5e-07
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 187
L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+ +N + + L V
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 188 AQR 196
A+R
Sbjct: 177 AKR 179
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 46.0 bits (104), Expect = 8e-07
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 44 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 205
I K+ E R +GFGFV F++ E+ ++A+ EMNG+ VG L V A +ED
Sbjct: 245 IRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
Score = 28.3 bits (60), Expect = 0.18
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 86 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 193
G FV F++ E+ KA+ +NG+ + + + V A+
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 1e-06
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 160
L +EF +GTI A+V+++ GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 37.5 bits (83), Expect = 3e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 172
L F G I S ++ + GR KGFG+V FS + A K V EMNG + +P
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 45.6 bits (103), Expect = 1e-06
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 8 RRLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 181
R L F+ G + A + D GRSKG+GFV + S E A A+ MN + + KP+ V
Sbjct: 113 RVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Query: 182 ALAQRKE 202
+ A ++E
Sbjct: 173 SYAFKRE 179
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.2 bits (102), Expect = 1e-06
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 190
L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E NG+ +G++P V L+
Sbjct: 46 LYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRP--VKLS 103
Query: 191 QRKEDCK 211
+ D K
Sbjct: 104 RATSDVK 110
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.8 bits (101), Expect = 2e-06
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 35 FGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDC 208
+ + SAK+M + S+G+GFV F+ + A+ EM G+I G +P+ V LA K
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS-- 267
Query: 209 KAHLTS 226
KAH+ S
Sbjct: 268 KAHVFS 273
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 3e-06
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 8 RRLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 184
R L F G++ A++ E GRSKGFG V F + +A ++ ++NG G +PL ++
Sbjct: 294 RNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLS 353
Query: 185 LA 190
A
Sbjct: 354 YA 355
Score = 30.7 bits (66), Expect = 0.033
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAV 136
L+ F G++ A + + ++GRS+G G V SS +EA A+
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAI 240
Score = 26.6 bits (56), Expect = 0.54
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 20 KEF-APFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEMNGRIVG 163
KEF G + + +++ L +G SKG + +S+ EEA A+ T N + +G
Sbjct: 83 KEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMG 133
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 4e-05
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 26 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 199
F PFG I + +D RSKGFG++ + +P A A+ +MNG + + + V L K
Sbjct: 360 FEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 26 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 184
F PFG I + K+ KG GFV +S A KA+ M G +VGT + +A
Sbjct: 317 FQPFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
Score = 38.3 bits (85), Expect = 2e-04
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +2
Query: 35 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 199
+ + TSAK++++ G S+ +GFV FSS +E A+ M G + +PL +++A K
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 36.3 bits (80), Expect = 7e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 169
LR F FG + VM + GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 32.3 bits (70), Expect = 0.011
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 17 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 190
R F FG + A +M++ GR +GFGFV + + E A +A + KP+ V A
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRA 322
Query: 191 QRK 199
K
Sbjct: 323 TPK 325
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 7e-04
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 71 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 187
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 9e-04
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 38 GTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 175
G + AKV E GRSKGFGF+ F S + A A+ +NGR + K +
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 35.5 bits (78), Expect = 0.001
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 RRLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 184
+ L F+ FG + K+ + G R GF FV + A +A+ +NG + +P+ V
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 185 LAQRKEDCKA 214
A K+ +A
Sbjct: 182 WAVSKDAFEA 191
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.004
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +2
Query: 26 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 202
F +G + S ++ + KGFG+V ++ ++A A++ G+ +G + L V L++ +E
Sbjct: 777 FRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRE 834
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.5 bits (73), Expect = 0.005
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEDCKAHLTSQYMQR 241
++G S+ F F+ F + E+A KA+ +N V T + V AL R + K S+Y +
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASK 100
Query: 242 MASMRMQ 262
+++Q
Sbjct: 101 NIELKLQ 107
Score = 31.9 bits (69), Expect = 0.014
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 80 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDCKAHLTSQ 229
S GFGFV F A A+ MNG ++ L + L+ + D A + Q
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQ 713
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.5 bits (73), Expect = 0.005
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 181
F G + S ++++ E G+ KG+GF + P A AV +N GT+ L V
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.7 bits (66), Expect = 0.033
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 8 RRLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR 154
R L EF PFG + + + R S+ F FV + +A A E++GR
Sbjct: 21 RELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGR 70
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.044
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 35 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 145
FG ++S+K ++ E KG+GF CF + A ++ M
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.9 bits (64), Expect = 0.058
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 136
L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.10
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 26 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 169
FA FG + + + L+ G KG+ + +++ E+A KAV E N ++ K
Sbjct: 30 FADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 0.24
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 14 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNG 151
LR F FG I + E GR+KGF FV + + A KA ++G
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 0.31
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 68 EDGRSKGFGFVCFSSPEEATKAVTEMNG 151
++G +G F F SPEEA V +NG
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 0.54
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 68 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDCKAHLTSQYMQRMA 247
++G +G F F PEEA V +NG + + L V ++ + + +R A
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKVEKAKKRQA 297
Query: 248 SMR 256
R
Sbjct: 298 EER 300
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 0.72
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +2
Query: 44 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 193
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 108 EKHTNPKPLLRPSSNMTLAEVIVPKGANSLRRRLVP 1
+K +PKP+ + A +IVP+G N + + +VP
Sbjct: 708 QKLIDPKPVFASQLSRKRA-IIVPEGGNYIYKTVVP 742
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 2.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 127 CGFFRR*KTYESKTFAATILQHDLSRSNSSERCKFFTK 14
C FFR+ K I HDL + CK+F K
Sbjct: 41 CKFFRQGTCTSGKN---CIFSHDLELATEKTICKYFQK 75
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 20 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 139
K+ P TS + DGR K + + +PE+ T V+
Sbjct: 543 KDTIPSRFKTSISTEVHDGRLKKYPYYHVKTPEKGTTVVS 582
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 68 EDGRSKGFGFVCFSSPEEATKAVTEM 145
E G+SKGF F+ + AV M
Sbjct: 67 ETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 3.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 242 CVACTVKSNGLCSL 201
C+ CTVK NG+ +L
Sbjct: 127 CMCCTVKDNGIKAL 140
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -3
Query: 242 CVACTVKSNGLCSLPCVELKQHKE 171
C C+V SN + C HK+
Sbjct: 109 CKTCSVDSNSALCVKCFRATSHKD 132
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 120 SSGDEKHTNPKPLLRPSSNMTLAEVIVPKGAN 25
S+GD +H+ + + + S +T +E VPK N
Sbjct: 241 SNGDLQHSKVQNVDQKSGFLTSSETDVPKNIN 272
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 23.4 bits (48), Expect = 5.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 156 IRPFISVTAFVASSGDEKHTNPKPLLRPSSNMTLAEVIVPKGANSLRRRLVP 1
IR F TA V + K + KP S ++V+VP A ++++ +VP
Sbjct: 496 IRSFYE-TATVKAKAPTKKSKVKP-----SKQEESKVVVPSNAKAVKKSVVP 541
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 62 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 163
+L+ R++ G V S + + + + NG IVG
Sbjct: 11 LLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVG 44
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 80 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 187
+KG+ ++ + ++A AV +MN + + L+V++
Sbjct: 139 NKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSI 174
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 246 AMRCMYCEVKWALQSSL 196
AM+C+ C V W SSL
Sbjct: 253 AMKCLGCSVIWHTFSSL 269
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 71 DGRSKGFGFVCFS 109
DG KG+G VC S
Sbjct: 243 DGDEKGYGHVCIS 255
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 120 SSGDEKHTNPKPLLRPSSNMTLA--EVIVPKGANSLRRRLVP 1
++G E++ +PL P+SN+ L + P N++ + P
Sbjct: 71 TAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYP 112
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 90 KPLLRPSSNMTLAEVIVPKGANSLRRRLV 4
+P P + VIVP G ++ RLV
Sbjct: 19 RPSTPPPKEVLHTRVIVPNGPEEIKLRLV 47
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 128 KAVTEMNGRIVGTKPLYVALAQRKEDCKA 214
+ + E + + GT + ALA RK +C+A
Sbjct: 25 RLIKEDSEFVFGTHSVKNALATRKRECRA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,684
Number of Sequences: 5004
Number of extensions: 19954
Number of successful extensions: 92
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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