Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P24
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 73   WSQQRFWIRM 102
            W+++RFW R+
Sbjct: 1191 WNEKRFWERL 1200


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 258 IRILAMRCMYCEVK 217
           +RI   RC YC +K
Sbjct: 64  LRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 258 IRILAMRCMYCEVK 217
           +RI   RC YC +K
Sbjct: 113 LRINRNRCQYCRLK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,581
Number of Sequences: 438
Number of extensions: 1216
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)