Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P23
(376 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 144 3e-36
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 143 7e-36
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.24
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 1.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 2.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 2.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 3.9
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 9.0
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 24 9.0
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 144 bits (350), Expect = 3e-36
Identities = 69/122 (56%), Positives = 92/122 (75%)
Frame = +3
Query: 9 LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
LVNRT G K A++ LKGR+ EVSLADLQ D E SFRK +L ED+QG++ L +F+G D
Sbjct: 47 LVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFD 104
Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI
Sbjct: 105 MTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAI 164
Query: 369 RK 374
+
Sbjct: 165 HQ 166
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 143 bits (347), Expect = 7e-36
Identities = 69/122 (56%), Positives = 92/122 (75%)
Frame = +3
Query: 9 LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
LVNRT G K A++ LKGR+ EVSLADLQ D E +FRK +L ED+QG++ L +F+G+
Sbjct: 47 LVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLS 104
Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
+T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + +KT YAQ +Q+RAI
Sbjct: 105 ITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAI 164
Query: 369 RK 374
R+
Sbjct: 165 RQ 166
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.24
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 63 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 236
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 237 IEANIDVKTT 266
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 1.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 288 FCIGFTNKDTLSQRKTCY 341
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 2.2
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 165 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 338
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 186 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 284
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 207 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 344
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 6.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 36 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 131
+ S GR + +AD DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 269 RICPTCFLHRFHQ 307
R C T FLHRF++
Sbjct: 1255 RYCTTSFLHRFYE 1267
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 188 VHAVEIAENITSLDILSDKSELAERPFRI 102
VH++ + +IL+D S L RPF +
Sbjct: 36 VHSISKERRDSLTEILNDSSSLPARPFSL 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,961
Number of Sequences: 5004
Number of extensions: 29292
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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