Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P23
         (376 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   205   2e-53
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   205   2e-53
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   205   2e-53
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   193   5e-50
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   182   1e-46
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   105   1e-23
M14646-1|AAA28988.1|  462|Drosophila melanogaster protein ( D.me...    27   5.9  
BT011034-1|AAR30194.1|  240|Drosophila melanogaster RE44641p pro...    27   5.9  
AE014296-1707|AAF50226.2|  462|Drosophila melanogaster CG8308-PA...    27   5.9  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  205 bits (500), Expect = 2e-53
 Identities = 99/121 (81%), Positives = 105/121 (86%)
 Frame = +3

Query: 9   LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
           LVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMD
Sbjct: 48  LVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMD 107

Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
           LTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR I
Sbjct: 108 LTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKI 167

Query: 369 R 371
           R
Sbjct: 168 R 168


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  205 bits (500), Expect = 2e-53
 Identities = 99/121 (81%), Positives = 105/121 (86%)
 Frame = +3

Query: 9   LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
           LVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMD
Sbjct: 48  LVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMD 107

Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
           LTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR I
Sbjct: 108 LTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKI 167

Query: 369 R 371
           R
Sbjct: 168 R 168


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  205 bits (500), Expect = 2e-53
 Identities = 99/121 (81%), Positives = 105/121 (86%)
 Frame = +3

Query: 9   LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
           LVNRTQG +IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMD
Sbjct: 48  LVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMD 107

Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
           LTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR I
Sbjct: 108 LTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKI 167

Query: 369 R 371
           R
Sbjct: 168 R 168


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  193 bits (471), Expect = 5e-50
 Identities = 95/122 (77%), Positives = 101/122 (82%), Gaps = 1/122 (0%)
 Frame = +3

Query: 9   LVNRTQGTKIASEGLKGRVFEVSLA-DLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGM 185
           LVNRTQG +IAS+  KGRVFEVSL  DLQ D D E SFRKFRLIAEDVQ RNVLCNFHGM
Sbjct: 48  LVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGM 107

Query: 186 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRA 365
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYA  +QVR 
Sbjct: 108 DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRK 167

Query: 366 IR 371
           IR
Sbjct: 168 IR 169


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  182 bits (444), Expect = 1e-46
 Identities = 87/105 (82%), Positives = 91/105 (86%)
 Frame = +3

Query: 57  GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 236
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 237 IEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIR 371
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIR 118


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  105 bits (253), Expect = 1e-23
 Identities = 49/63 (77%), Positives = 53/63 (84%)
 Frame = +3

Query: 183 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVR 362
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 363 AIR 371
            IR
Sbjct: 61  KIR 63


>M14646-1|AAA28988.1|  462|Drosophila melanogaster protein (
           D.melanogaster alpha-tubulin gene (alpha-4), complete
           cds. ).
          Length = 462

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 239 NQCLPFLYHPSELISGEVHA 180
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMRELYHPEQLISGKEDA 110


>BT011034-1|AAR30194.1|  240|Drosophila melanogaster RE44641p
           protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 239 NQCLPFLYHPSELISGEVHA 180
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMGELYHPEQLISGKEDA 110


>AE014296-1707|AAF50226.2|  462|Drosophila melanogaster CG8308-PA
           protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 239 NQCLPFLYHPSELISGEVHA 180
           N C+  LYHP +LISG+  A
Sbjct: 91  NGCMRELYHPEQLISGKEDA 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,075
Number of Sequences: 53049
Number of extensions: 365743
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)