Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P23
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   160   3e-40
AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    29   1.4  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    27   3.3  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   4.4  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  160 bits (389), Expect = 3e-40
 Identities = 80/121 (66%), Positives = 93/121 (76%)
 Frame = +3

Query: 9   LVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMD 188
           L+NRTQGTKIASEGLKGRVFEVSL DL   +++E  FRKF+LIAEDVQG+NVL NFH M 
Sbjct: 46  LINRTQGTKIASEGLKGRVFEVSLGDL---NNSEADFRKFKLIAEDVQGKNVLTNFHAMS 102

Query: 189 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAI 368
           +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y + +++R I
Sbjct: 103 MTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKI 162

Query: 369 R 371
           R
Sbjct: 163 R 163


>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 265 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 128
           V +  ++ ++ V H F+ H  L V   +PW    T R   + AISL
Sbjct: 60  VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 278 DISVSGLNVNVGFNQCLPF-LYHPSELISGEVHAVEIAENITSLDILSD 135
           D S++G+NV  G++  +PF + H S+L    VH +E  EN   ++  +D
Sbjct: 296 DSSMNGVNVPSGYSMDIPFKMQHRSKLTG--VHCIE--ENDEQIEASTD 340


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 191 EVHAVEIAENITSLDILSDKSELAE 117
           E+H +E AE++ SL +L  KSE+ +
Sbjct: 63  EMHIIEPAEHMKSLKVLMQKSEIEQ 87


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 337 HVLRWLSVS----LLVKPMQKTRRTYPSVVLTSMLASISVCHFFTIHLSLS 197
           HV  WLS+      +   +  TR+   S  + S++ S+++C F ++ +S+S
Sbjct: 36  HVEFWLSIFGGILTIFHFLVLTRKAMKSTSIISLMISVAICDFLSMIVSIS 86


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 111 FPHHYQPGDQQGRPQKHAPLDPQMQ 37
           + ++ Q   QQGRPQ++A   PQ Q
Sbjct: 34  YGYNNQQQQQQGRPQQYAGYPPQRQ 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,117
Number of Sequences: 27780
Number of extensions: 181393
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)