Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P22
         (283 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   0.47 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   5.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   5.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   5.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   5.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    20   5.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   7.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    19   7.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 0.47
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 96  EARRVHPPSLSNIHALGVTLSAPVRIPQPGG 4
           + +R H P L NI + G+ +    + P P G
Sbjct: 372 DKQRTHQPFLLNIPSEGIKVEPRDKAPSPYG 402


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  SNIHALGVTLSAPVRIPQPGG 4
           S++H   + +  P +IP P G
Sbjct: 649 SDVHQTHMRIRPPKKIPTPYG 669


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  SNIHALGVTLSAPVRIPQPGG 4
           S++H   + +  P +IP P G
Sbjct: 649 SDVHQTHMRIRPPKKIPTPYG 669


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  SNIHALGVTLSAPVRIPQPGG 4
           S++H   + +  P +IP P G
Sbjct: 649 SDVHQTHMRIRPPKKIPTPYG 669


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  SNIHALGVTLSAPVRIPQPGG 4
           S++H   + +  P +IP P G
Sbjct: 649 SDVHQTHMRIRPPKKIPTPYG 669


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 266 YNVHKSRRVRGVSPHFPVHLMRRC 195
           Y + KSR + GVS  F  +L+  C
Sbjct: 265 YGMSKSRNIEGVS--FGTNLVILC 286


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 7/36 (19%), Positives = 17/36 (47%)
 Frame = +2

Query: 134 DLPAKSAQVRAHRHEVLRL*SNVSSSGRESAD*PHV 241
           D P     + +H + + ++ ++    GR+S   P +
Sbjct: 37  DTPLSFKNIESHLNAISQITNSTLDPGRKSPSSPRI 72


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
          protein.
          Length = 126

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 97 RGPARTPAQ 71
          RGP RTP Q
Sbjct: 58 RGPPRTPLQ 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,098
Number of Sequences: 336
Number of extensions: 1425
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4790565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)