Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P22
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 62 1e-11
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 60 4e-11
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 59 1e-10
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 27 0.51
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 2.7
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 3.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 4.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 4.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 24 4.7
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 24 4.7
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 23 6.3
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 23 8.3
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 23 8.3
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 62.1 bits (144), Expect = 1e-11
Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 VVIFLRNRLKYALTG--MRCLDCEATSHQVDGKVRTDPTYPAGFMDVVSIEK 278
+++FLRNRLKYAL G ++ + + QVDGKVRTD T+P GFMDV+S+EK
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLI-QVDGKVRTDSTFPTGFMDVISVEK 94
Score = 36.3 bits (80), Expect = 8e-04
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
P W+LDKL G + S GPHK RECL
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECL 42
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 60.5 bits (140), Expect = 4e-11
Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 VVIFLRNRLKYALTG--MRCLDCEATSHQVDGKVRTDPTYPAGFMDVVSIEK 278
+++FLRNRLKYAL G ++ + + +VDGKVRTD T+P GFMDV+S+EK
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLI-KVDGKVRTDSTFPTGFMDVISVEK 94
Score = 36.3 bits (80), Expect = 8e-04
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
P W+LDKL G + S GPHK RECL
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECL 42
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 59.3 bits (137), Expect = 1e-10
Identities = 28/52 (53%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Frame = +3
Query: 129 VVIFLRNRLKYALTG--MRCLDCEATSHQVDGKVRTDPTYPAGFMDVVSIEK 278
+++FLRNRLKYAL G ++ + + +VDGKVRTD T+P GFMDV+S++K
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLI-KVDGKVRTDSTFPTGFMDVISVDK 94
Score = 36.3 bits (80), Expect = 8e-04
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
P W+LDKL G + S GPHK RECL
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECL 42
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 0.51
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 170 GERVLEPISQEDHYASIRAACGDPSRPGAYTRPACPTSML 51
G+R+++ S+ +++ A GDPSR G P S L
Sbjct: 49 GDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQL 88
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.6 bits (51), Expect = 2.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 57 GC-WTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYALTGMRCLDCEAT 200
GC WTS + R G + C N +V+ +N + ++T + +CE T
Sbjct: 953 GCTWTSLS-TRLGTLKEKGFCFNNLIVMNSQNISESSITSILLSNCEPT 1000
>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 123 HSRSLWGPVEARRVHPPS 70
H R++WG V VH PS
Sbjct: 61 HWRTMWGTVRVGIVHTPS 78
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 4.7
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +2
Query: 140 PAKSAQVRAHRHEVLRL*SNVSSSGRESAD*PHVPGG 250
PAKSAQ H + S SS G SA VPGG
Sbjct: 501 PAKSAQSSKHARRPSKQASAPSSPGTTSA---AVPGG 534
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 23.8 bits (49), Expect = 4.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 171 GMRCLDCEATSHQ 209
GM+C+DC T H+
Sbjct: 431 GMQCIDCHYTCHK 443
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 23.8 bits (49), Expect = 4.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 15 EEFGQEHLALRLKHGCWTSWAGVRAGPRRVPTSCANA 125
E E L K+GC +A V + PR+ S AN+
Sbjct: 105 EYIPSEEEKLSNKYGCCCQFAFVISNPRKPSLSVANS 141
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 23.8 bits (49), Expect = 4.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 105 PTSCANACVVIFLRNRLKYALTGMRCLDCEATSHQVDGK 221
P S NA I R YA+TG+ AT+ +VD K
Sbjct: 8 PLSLKNAAKCINNSLRSTYAITGVNLTRGLATNSKVDPK 46
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 23.4 bits (48), Expect = 6.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 132 LRKHSRSLWGPVEARRVHP 76
L+K+ LW +E +++HP
Sbjct: 337 LKKYDYELWENLEEKQIHP 355
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 254 KSRRVRGVSPHFPVHLM 204
+S RVRGV +FP+ L+
Sbjct: 272 RSSRVRGVRQNFPLKLL 288
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 167 ERVLEPISQEDHYASIRAACGDPSRPGAY 81
++V +P+ E + +++ A DP RPG Y
Sbjct: 636 QKVFKPL--EGYLSAVIRAKPDPKRPGKY 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,657
Number of Sequences: 5004
Number of extensions: 22760
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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