Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P22
(283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 64 2e-11
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 62 8e-11
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 62 8e-11
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 29 0.55
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 28 0.97
07_03_0097 + 13372270-13372399,13372958-13373457 27 1.7
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 27 1.7
08_02_0317 + 15705184-15705391,15706194-15706270,15706364-157064... 27 2.2
06_01_0049 - 438297-439709,440357-440401 27 2.2
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 27 2.2
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 27 2.2
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 27 3.0
02_01_0640 + 4796079-4797032,4797269-4797934 27 3.0
09_06_0314 + 22242843-22243649 26 3.9
05_02_0085 - 6465126-6466049 26 3.9
05_01_0430 - 3406472-3406490,3406662-3406681,3407330-3407428,340... 26 3.9
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 26 3.9
01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028 26 3.9
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721 26 5.2
07_03_0929 - 22702297-22703010,22703095-22703432,22703668-22703893 26 5.2
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179... 26 5.2
03_05_0584 - 25839566-25840255 26 5.2
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 25 6.8
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 25 9.0
11_01_0706 + 5811722-5814025 25 9.0
08_02_1013 + 23554996-23555139,23555456-23555541,23556375-235563... 25 9.0
05_05_0058 + 22004851-22005193,22005283-22005674 25 9.0
03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141... 25 9.0
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 25 9.0
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 63.7 bits (148), Expect = 2e-11
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 129 VVIFLRNRLKYALTGMRCLDCEATSH-QVDGKVRTDPTYPAGFMDVVSIEK 278
+++ LRNRLKYALT + H VDGKVRTD TYPAGFMDVVSI K
Sbjct: 60 LILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
P WMLDKLGG + S+GPHK RECL
Sbjct: 31 PSHWMLDKLGGAFAPKPSSGPHKARECL 58
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 61.7 bits (143), Expect = 8e-11
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 129 VVIFLRNRLKYALTGMRCLDCEATSHQ-VDGKVRTDPTYPAGFMDVVSIEK 278
+++ +RNRLKYALT + H VDGKVRTD TYPAGFMDV+SI K
Sbjct: 44 LILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK 94
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
PK WMLDKLGG + S+GPHK RECL
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECL 42
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 61.7 bits (143), Expect = 8e-11
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 129 VVIFLRNRLKYALTGMRCLDCEATSHQ-VDGKVRTDPTYPAGFMDVVSIEK 278
+++ +RNRLKYALT + H VDGKVRTD TYPAGFMDV+SI K
Sbjct: 44 LILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK 94
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/28 (67%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 PKAWMLDKLGGC-TRRASTGPHKLRECL 127
PK WMLDKLGG + S+GPHK RECL
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECL 42
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 29.1 bits (62), Expect = 0.55
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 3 IPRAEEFGQEHLALRLKHGC 62
IP+ +FG LAL++KH C
Sbjct: 566 IPKVSDFGSSELALKMKHVC 585
>04_04_0487 -
25585229-25585540,25585627-25585745,25586029-25586194,
25586295-25586427,25586527-25586618,25586739-25586925,
25587183-25587271,25587318-25587379,25587462-25587567,
25587754-25588052,25588181-25588288,25588369-25588439,
25588792-25588871
Length = 607
Score = 28.3 bits (60), Expect = 0.97
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 29 GALSVTPKAWMLDKLGGCTRRASTGPHKLRECLRSDLPAKSAQVRAHRHEVLRL*SNVSS 208
GA VT +L + G C ++S GP L +C +DL + R+ VL+ N ++
Sbjct: 147 GAADVTAMPTILVQKGPCRSQSSDGPRDL-DCDSNDLEGELITSRSSPQSVLKREPNTAN 205
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 78 PPSLSNIHALGVTLSAPVRIPQPG 7
P L ++H+L ++LS P ++ QPG
Sbjct: 55 PHHLQHLHSLSLSLSLPTKLFQPG 78
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 42 LRLKHGCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYAL 167
LR HGCW++ V+AG +R SC + +LR LK+ +
Sbjct: 31 LRYGHGCWSA-VPVKAGLQRNGKSC-RLRWINYLRPGLKHGM 70
>08_02_0317 +
15705184-15705391,15706194-15706270,15706364-15706406,
15706507-15706564,15707576-15707645,15708409-15708876
Length = 307
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 182 APHA--GERVLEPISQEDHYASIRAACGDPSRPGAYTRPACPT 60
APH+ + +EP H ++ CG+P P + RP PT
Sbjct: 214 APHSKNSQSQVEPTKSPSHDDAL--PCGEPLTPDSSCRPGSPT 254
>06_01_0049 - 438297-439709,440357-440401
Length = 485
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 93 ARRVHPPSLSNIHALGVTLSAPVRIPQPGG 4
A +HP SNI GVT+ AP P G
Sbjct: 219 AWNIHPVYSSNIVVQGVTILAPTHSPNTDG 248
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 57 GCWTSWAGVRAGPRR 101
G W SW GVR G RR
Sbjct: 46 GIWVSWLGVRPGIRR 60
>01_01_0517 +
3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 92 ASTGPHKLRECLRSDLPAKSAQVRAHRHEVL 184
A TG H +ECL +L +K+ H+ E L
Sbjct: 781 AHTGSHLFKECLLGELASKTVVYVTHQIEFL 811
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 105 GPVEARRVHPPSLSNIHALGVTLSAPVRIPQ 13
GPV A+ PP+ + LG +AP ++P+
Sbjct: 130 GPVAAQATPPPAPAPFSLLGSACAAPKKMPE 160
>02_01_0640 + 4796079-4797032,4797269-4797934
Length = 539
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 47 PKAWMLDKLGGCTRRASTGPHKLRECL 127
P +W+ +GG RRA KL E +
Sbjct: 234 PSSWLASAIGGRARRAEANSRKLYELM 260
>09_06_0314 + 22242843-22243649
Length = 268
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 126 CVVIFLRNRLKYALTGMRCLDCEAT 200
C LR RLK ++ MRCL +++
Sbjct: 226 CGAFSLRRRLKLSMAAMRCLQLQSS 250
>05_02_0085 - 6465126-6466049
Length = 307
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 252 IPPGTWGQSALSRPLDETLLHNLSTSCR*ART*ADFAGR 136
+PP + G+ L LDETL+H+ + AR DFA R
Sbjct: 122 LPPVSPGRRTLFLDLDETLIHSQTDPA--ARARHDFAVR 158
>05_01_0430 -
3406472-3406490,3406662-3406681,3407330-3407428,
3407810-3407880,3407956-3408127
Length = 126
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 6 PRAEEFGQEHLALRLKHGC-WTSWAGVRAGPRRVPTSCANACVVI 137
PR FG R +H W SWA R G R P A V +
Sbjct: 11 PRPPGFGSSGSPCRRRHRRRWCSWAARRMGGGRRPQESPAAPVAV 55
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 100 RRGPARTPAQLVQHPCFRRNAKC 32
R PA+ +HPCFR A C
Sbjct: 399 REDGVANPAKYPEHPCFRLLASC 421
>01_05_0182 + 18989094-18989152,18989211-18989512,18990121-18991028
Length = 422
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 126 CVVIFLRNRLKYALTGMRCLDCEAT 200
C LR RLK ++ MRCL +++
Sbjct: 380 CGAFSLRRRLKLSMAAMRCLQLQSS 404
>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
Length = 287
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 50 KAWMLDKLGGCTRRASTGPHKLRECLRSDLPAKSAQVRAH 169
KAW +KL C A + CLR DLP + RAH
Sbjct: 132 KAWK-NKLPDCLSDAHRHV-TIPTCLREDLPPSEMEHRAH 169
>07_03_0929 - 22702297-22703010,22703095-22703432,22703668-22703893
Length = 425
Score = 25.8 bits (54), Expect = 5.2
Identities = 24/92 (26%), Positives = 36/92 (39%)
Frame = +2
Query: 5 PPG*GIRTGALSVTPKAWMLDKLGGCTRRASTGPHKLRECLRSDLPAKSAQVRAHRHEVL 184
PP G GA+S+ W+L ++ T +A G + EC S A +A + +
Sbjct: 175 PPITGGSKGAVSLRLDDWVLCRIYKKTNKAGAGQRSM-ECEDSVEDAVAAYAPSSQQHAT 233
Query: 185 RL*SNVSSSGRESAD*PHVPGGIYGRCIH*ES 280
S G H GG Y +H +S
Sbjct: 234 AAAGMAGSDGAGGVAAAH--GGDYSSLLHHDS 263
>07_03_0200 -
15016084-15016342,15016814-15016869,15016963-15017960,
15018707-15018768,15019242-15019274,15019697-15019881,
15020033-15020133,15020783-15020795,15021216-15021319,
15021593-15021693,15022773-15022849,15022965-15023021,
15023158-15023268,15023803-15023859
Length = 737
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 275 LNGYNVHKSRRVRGVSPHFPVHLMR 201
LN YN+H + R + ++P F + + R
Sbjct: 434 LNAYNIHDTSRWKDLNPKFVLQVYR 458
>03_05_0584 - 25839566-25840255
Length = 229
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 60 CWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYALTGMRCLDCEATSH 206
C AG R P C NAC V + +Y TG +C T++
Sbjct: 147 CEADVAGQCPSELRAPGGCNNACTVF---KQDQYCCTGSAANNCGPTNY 192
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 173 AGERVLEPISQEDHYASIRAACG 105
AGE V +PIS E+ A I CG
Sbjct: 223 AGEPVTDPISGEEAKAKILKICG 245
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 77 GCTRRASTGPHKLRECLRSDLPAKSAQVRAHR 172
GC R AS + R+ R+ P++ AQVR +R
Sbjct: 949 GCAR-ASVSGWEWRDWARNATPSERAQVRGYR 979
>11_01_0706 + 5811722-5814025
Length = 767
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 101 GPHKLRECLRSDLPAKSAQV 160
GP R CL S+LP S+Q+
Sbjct: 679 GPPLQRNCLGSELPKNSSQI 698
>08_02_1013 +
23554996-23555139,23555456-23555541,23556375-23556399,
23556655-23556711,23556795-23556852,23557767-23558614,
23558862-23558921
Length = 425
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 194 SNVSSSGRESAD*PHVPGGIYGRCIH 271
S +SS +++A HVP +YG C+H
Sbjct: 53 SCISSKPKKTAK-HHVPVRLYGTCVH 77
>05_05_0058 + 22004851-22005193,22005283-22005674
Length = 244
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 89 RASTGPHKLRECLRSDLPAKSAQVRAHRHE 178
RA P +REC+ LPA A+VR E
Sbjct: 208 RAPPLPPVVRECVPPPLPAVRARVRDRERE 237
>03_01_0174 +
1410322-1410345,1410458-1410760,1411914-1412034,
1412147-1412321,1412417-1412487,1412586-1413268
Length = 458
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 84 VHPPSLSNIHALGVTLSAPVRIPQPGG 4
+HP +N+ G+T+ AP+ P G
Sbjct: 202 LHPTYCTNVTISGITILAPLNSPNTDG 228
>01_06_1699 -
39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 92 ASTGPHKLRECLRSDLPAKSAQVRAHRHEVLR 187
A TG H +ECL + +K+ H+ E LR
Sbjct: 693 AHTGAHLFKECLLRLMSSKTVIYVTHQLEFLR 724
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,422,930
Number of Sequences: 37544
Number of extensions: 190823
Number of successful extensions: 615
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -