Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P22
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...    48   1e-06
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical ...    27   2.7  
U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of s...    26   3.6  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    26   3.6  
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    26   4.8  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    25   6.3  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    25   6.3  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    25   8.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    25   8.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    25   8.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 135 IFLRNRLKYALTGMRCLDCEATSH-QVDGKVRTDPTYPAGFMDVVSIEK 278
           +FLRNRLKYAL              +VDGKVRT   +P GFMDVV+IE+
Sbjct: 45  LFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIER 93



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 47  PKAWMLDKLGGC-TRRASTGPHKLRECL 127
           P  WMLDKLGG    R + GPHKLRE L
Sbjct: 14  PSHWMLDKLGGVFAVRPNPGPHKLRESL 41


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 51  KHGCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYALTGMRCL 185
           K G WT WA  +      PT+C +   +++ R  L   +    C+
Sbjct: 29  KGGMWTEWATTKP----CPTNCGSCAKILYTRKCLSTNIPNCACV 69


>AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical
           protein C11D2.2 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 129 RKHSRSLWGPVEARRVHPPSLSNIHAL 49
           ++HS  L GPV + R+H  S  + H +
Sbjct: 24  KEHSTCLMGPVVSNRLHSSSFKSKHTI 50


>U50311-11|AAN84861.1|   86|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform b
           protein.
          Length = 86

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 57  GCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYALTGMRCLD 188
           GC T+       P   PT C   C+V   +    +   G+RC+D
Sbjct: 39  GCGTACEATCEKPN--PTVCTKQCIVNVCQCSKGFVRHGLRCID 80


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 57  GCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKYALTGMRCLD 188
           GC T+       P   PT C   C+V   +    +   G+RC+D
Sbjct: 88  GCGTACEATCEKPN--PTVCTKQCIVNVCQCSKGFVRHGLRCID 129


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 267 IQRP*IPPGTWGQSALSRPLDETLLHNLSTSCR*ART 157
           ++ P + PG W +    R L + ++ N+ +SC   +T
Sbjct: 449 VEVPTLAPGQWVEGEYFRVLSKKVISNIISSCTTTQT 485


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 28  RST*RYA*SMDVGQAGRVYAPGLDGSP 108
           RST     S   G AG V APG DG+P
Sbjct: 80  RSTNEKCCSCGTGTAGPVGAPGDDGAP 106


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 283 FAFSMDTTSINPAGYVGSV 227
           F FS  T S+NP GY+  V
Sbjct: 245 FTFSDPTLSLNPTGYIWGV 263


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 64  GQAGRVYAPGLDGSP 108
           GQAG    PGLDG P
Sbjct: 109 GQAGAAGKPGLDGEP 123


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 24    GQEHLALRLKHGCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKY 161
             G++   ++ K    + WA V  G  R  ++  + C++  LR  + Y
Sbjct: 14376 GEKEFVVQYKSDGSSIWASVDIGGPRSESAATSKCIIDGLREGIPY 14421


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 24    GQEHLALRLKHGCWTSWAGVRAGPRRVPTSCANACVVIFLRNRLKY 161
             G++   ++ K    + WA V  G  R  ++  + C++  LR  + Y
Sbjct: 14376 GEKEFVVQYKSDGSSIWASVDIGGPRSESAATSKCIIDGLREGIPY 14421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,942
Number of Sequences: 27780
Number of extensions: 147886
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)