Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P22
         (283 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   5.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    19   8.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 18  EFGQEHLALRLKHGCWTSWAGVRAGPRRVPTSCAN 122
           E G+  + ++   G  T W GV  G R +  SC++
Sbjct: 404 ESGEGTIPVKSSEGIQT-WDGVLMGQRLLTMSCSD 437


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 120 SRSLWGPVEARRVHPPSLSNIHALGVTLSAPVRIP 16
           SR    P E   V+  S   IH    T +AP ++P
Sbjct: 424 SRDELHPRELEAVNLGSACRIHGSPATTAAPPQLP 458


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 6    PRAEEFGQEHLALRLKHG 59
            P  E+F    LA+ L+HG
Sbjct: 1074 PNDEDFVLHSLAVELEHG 1091


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 114 SLWGPVEARRVHPPSLSNI 58
           +LW P+      PPS  N+
Sbjct: 755 NLWQPLSVSIPPPPSAQNV 773


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
          protein protein.
          Length = 166

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 88 ARTPAQLVQHPCFRRNAK 35
          A TP+ L + PC   N K
Sbjct: 17 ALTPSTLGRFPCLLLNGK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,117
Number of Sequences: 438
Number of extensions: 1442
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)