Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P19
(192 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 129 2e-31
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 129 2e-31
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 129 2e-31
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 129 2e-31
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 127 1e-30
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 125 5e-30
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 124 7e-30
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 124 7e-30
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 123 2e-29
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 123 2e-29
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 121 6e-29
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 121 6e-29
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 120 1e-28
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 117 1e-27
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 117 1e-27
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 108 5e-25
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 79 4e-16
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 79 4e-16
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 79 4e-16
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 77 2e-15
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 76 3e-15
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 76 3e-15
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 62 7e-11
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 62 7e-11
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 35 0.007
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 35 0.007
AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine r... 29 0.60
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 27 1.8
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 27 1.8
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 27 1.8
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 26 3.2
AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine re... 26 3.2
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81063-2|CAB02959.1| 823|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z32683-15|CAE17933.2| 375|Caenorhabditis elegans Hypothetical p... 25 7.4
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 25 7.4
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 25 7.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 25 7.4
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 25 7.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 25 7.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 25 7.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 25 7.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 25 7.4
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 129 bits (312), Expect = 2e-31
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F+TFFSETG+G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHY
Sbjct: 49 FSTFFSETGSGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHY 108
Query: 182 TIG 190
TIG
Sbjct: 109 TIG 111
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 129 bits (312), Expect = 2e-31
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F+TFFSETG+G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHY
Sbjct: 48 FSTFFSETGSGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHY 107
Query: 182 TIG 190
TIG
Sbjct: 108 TIG 110
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 129 bits (312), Expect = 2e-31
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F+TFFSETG+G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHY
Sbjct: 49 FSTFFSETGSGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHY 108
Query: 182 TIG 190
TIG
Sbjct: 109 TIG 111
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 129 bits (312), Expect = 2e-31
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F+TFFSETG+G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHY
Sbjct: 49 FSTFFSETGSGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHY 108
Query: 182 TIG 190
TIG
Sbjct: 109 TIG 111
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 127 bits (306), Expect = 1e-30
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
+NTFFSET +GKHVPRA+FVDLEPTV+DEVRTGTY +LFHPEQLI+GKEDAANNYARGHY
Sbjct: 49 YNTFFSETPSGKHVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHY 108
Query: 182 TIG 190
TIG
Sbjct: 109 TIG 111
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 125 bits (301), Expect = 5e-30
Identities = 54/63 (85%), Positives = 59/63 (93%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
FNTFFSET AGKHVPRA+ VDLEPT +DE+RTGTY+ LFHPEQL+TGKEDAANNYARGHY
Sbjct: 54 FNTFFSETMAGKHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHY 113
Query: 182 TIG 190
TIG
Sbjct: 114 TIG 116
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 124 bits (300), Expect = 7e-30
Identities = 51/63 (80%), Positives = 62/63 (98%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG+G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 124 bits (300), Expect = 7e-30
Identities = 51/63 (80%), Positives = 62/63 (98%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG+G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 123 bits (297), Expect = 2e-29
Identities = 51/63 (80%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGNGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 123 bits (297), Expect = 2e-29
Identities = 51/63 (80%), Positives = 61/63 (96%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGNGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 121 bits (292), Expect = 6e-29
Identities = 50/63 (79%), Positives = 60/63 (95%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG G++VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGNGRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 121 bits (292), Expect = 6e-29
Identities = 50/63 (79%), Positives = 60/63 (95%)
Frame = +2
Query: 2 FNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 181
F TFFS+TG G++VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHY
Sbjct: 47 FTTFFSDTGNGRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHY 106
Query: 182 TIG 190
T+G
Sbjct: 107 TVG 109
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 120 bits (290), Expect = 1e-28
Identities = 49/61 (80%), Positives = 59/61 (96%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTI 187
TFFS+TG G+HVPR++FVDLEPTVVDE+RTG Y++LFHPEQ++TGKEDAANNYARGHYT+
Sbjct: 48 TFFSDTGYGRHVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTV 107
Query: 188 G 190
G
Sbjct: 108 G 108
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 117 bits (282), Expect = 1e-27
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
NTFF+ET GKHVPR +FVDLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YT
Sbjct: 56 NTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYT 115
Query: 185 IG 190
IG
Sbjct: 116 IG 117
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 117 bits (282), Expect = 1e-27
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
NTFF+ET GKHVPR +FVDLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YT
Sbjct: 28 NTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYT 87
Query: 185 IG 190
IG
Sbjct: 88 IG 89
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 108 bits (260), Expect = 5e-25
Identities = 46/60 (76%), Positives = 53/60 (88%)
Frame = +2
Query: 11 FFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 190
FFSE+ GKHVPRA++VDLEPTV+DE+R G Y LFHP+Q+I GKEDAANNYARGHYTIG
Sbjct: 55 FFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIG 114
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 79.0 bits (186), Expect = 4e-16
Identities = 32/62 (51%), Positives = 44/62 (70%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
N +++E GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEANGGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 79.0 bits (186), Expect = 4e-16
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
N +++E G+ K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 79.0 bits (186), Expect = 4e-16
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
N +++E G+ K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 76.6 bits (180), Expect = 2e-15
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
N +++E GK+VPRA VDLEP +D VR G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASGGKYVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 76.2 bits (179), Expect = 3e-15
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
+ +++E GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 DVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 76.2 bits (179), Expect = 3e-15
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = +2
Query: 5 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 184
+ +++E GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT
Sbjct: 48 DVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 185 IG 190
G
Sbjct: 108 EG 109
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 61.7 bits (143), Expect = 7e-11
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTI 187
+++ E K+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y
Sbjct: 49 SYYKEMEGRKYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQ 108
Query: 188 G 190
G
Sbjct: 109 G 109
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 61.7 bits (143), Expect = 7e-11
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTI 187
+++ E K+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y
Sbjct: 49 SYYKEMEGRKYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQ 108
Query: 188 G 190
G
Sbjct: 109 G 109
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 35.1 bits (77), Expect = 0.007
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 14 FSETGAGKHVPRAVFVDLEPTVVD-EVRTGTYRQLFHPEQLITGKE--DAANNYARGH 178
F + +VPRAV VDLEP V++ +++ + LF+ + + A NN+A G+
Sbjct: 53 FYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASGY 110
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 35.1 bits (77), Expect = 0.007
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 14 FSETGAGKHVPRAVFVDLEPTVVD-EVRTGTYRQLFHPEQLITGKE--DAANNYARGH 178
F + +VPRAV VDLEP V++ +++ + LF+ + + A NN+A G+
Sbjct: 53 FYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASGY 110
>AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein24 protein.
Length = 287
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 190 SNGVVTTSIVVCGILLTSDKLFWMKQLSVCASADLVNYSGF 68
S G++T ++ VC I++ LF++ + + S+ LV+ S F
Sbjct: 38 SFGIITKNLAVCNIVMCGLGLFFLFPMQLAPSSVLVDNSHF 78
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVD 85
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVD 85
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 8 TFFSETGAGKHVPRAVFVDLEPTVVD 85
T ++ TG+GK++ F DL P + D
Sbjct: 131 TTYTSTGSGKNIEYITFFDLTPIIKD 156
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 175 TTSIVVCGILLTSDKLFWMKQLSVCASADLVNYSGFKIDEDG 50
TT+ + CGI S F + + VC + NY G I + G
Sbjct: 151 TTNKIGCGISKCSSDSFGTQYVVVCLYSPAGNYIGMDIYKSG 192
>AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine
receptor, class x protein26 protein.
Length = 331
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 190 SNGVVTTSIVVCGILLTSDKLFWMKQLSVCASADLVNYSGF 68
S G++T ++ VC I + LF++ + + S+ LV+ S F
Sbjct: 38 SFGIITKNLAVCNIGMCGLCLFFLFPMQLAPSSFLVDNSHF 78
>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical protein
C26H9A.2 protein.
Length = 1334
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 11 FFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA 157
F +E RAV V L+P + +T + LFH E+++ AA
Sbjct: 1201 FLAEEPMTAETVRAV-VQLQPHYIGNYQTASTAPLFHEEKIVFSLSAAA 1248
>Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical
protein F55D12.1 protein.
Length = 141
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 77 QWVQDRRRRHGERACQLRSR 18
++ +D++ HG+ AC+LR+R
Sbjct: 71 EYRRDQQSEHGQLACELRAR 90
>Z81063-2|CAB02959.1| 823|Caenorhabditis elegans Hypothetical
protein F15D3.4 protein.
Length = 823
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 20 ETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAAN 160
+TG GK V+ E + +E T + FH L GK D N
Sbjct: 252 KTGLGKMDKNGHVVERESFLEEEFHDETIYKQFHAPDLGMGKPDNVN 298
>Z32683-15|CAE17933.2| 375|Caenorhabditis elegans Hypothetical
protein R07E5.17 protein.
Length = 375
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 157 CGILLTSDKLFWMKQLSVCASADLVNYSGFKIDEDGTGNVLASSGLAEERV 5
C I+ +SDK F + + S C ++ +Y+ ++ E+ + S G E R+
Sbjct: 85 CSIIQSSDKCFTVIKSSECLASTQFSYNFWENSEEMSECFHKSKGNMECRI 135
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 625 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 656
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 839 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 870
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 975 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1006
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1055
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1055
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 1016 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1047
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 1027 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1058
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 77 VVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 172
VV +++TG + PE+ + E A+N+Y +
Sbjct: 1028 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,991,953
Number of Sequences: 27780
Number of extensions: 87324
Number of successful extensions: 265
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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