Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P18
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    28   0.45 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   0.79 
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   1.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   2.4  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   3.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   4.2  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   5.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   7.3  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   9.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   9.7  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    24   9.7  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 93  KKNISVISDI*VTLSELKKSLSKPTQVTIPSHLSPLSYR 209
           K+N S  S + ++ + L+ S S PT  T PSH  P+SY+
Sbjct: 609 KQNKSSTSTLQIS-APLETSQSPPTPRTKPSHKPPVSYK 646


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 291 RVWSKYEICYFTNTCNYSQRIIIY*KLVCTIAARDAKESSLV 166
           R+W+ + +        YS+ + +Y KL+C+ A R+    SL+
Sbjct: 591 RIWNYWLVALIQQKL-YSRAVKVYSKLICSSAVRNDTTRSLI 631


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/62 (22%), Positives = 34/62 (54%)
 Frame = -2

Query: 361 YISISRNSKDQGMISNYQEFKINKSLVKIRDLLFHKHVQLFTKNYYLLKISLYDSGERCE 182
           +I++S +     +I    EF+ ++S+ +++ ++  +  +    +   + I +YD+GE  E
Sbjct: 33  WIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSSSGVPIEIYDAGEEDE 92

Query: 181 GI 176
           GI
Sbjct: 93  GI 94


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 109 TLMFFLKHFNELNQTLKRLILTFEGRLECELRDS 8
           T  FFL H N  N  L +    F G   CE  D+
Sbjct: 670 TPSFFLNHSNFENIALSKETFNFGGEANCENTDT 703


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 262 FHKHVQLFTKNYYLLKISLYDSGERCEGI-VTCVGLLSDFFNSLNVTQMSLMTLMFFLKH 86
           FH+H            I+ YD G+ C+ I  + +G+   FF   +VT+    + +  +K+
Sbjct: 106 FHQHFDYDDSEVIKNSIAAYDEGKLCKSIEESKLGVSQSFFP--DVTKRLPCSCLSEIKN 163

Query: 85  FNELNQTLKRLIL 47
            ++L   LK+ IL
Sbjct: 164 IDDLG--LKQRIL 174


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 355 SISRNSKDQGMISNYQEFKINKSLVKI 275
           S+ R  ++QG +S   EF++ K LV++
Sbjct: 651 SLDRFLEEQGQLSRLDEFRVWKILVEV 677


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 KSLSKPTQVTIPSHLSPLSYRLIFN 221
           +S+S P  +    HLSPL+ +  FN
Sbjct: 407 RSISNPLHLVDSQHLSPLNRKTHFN 431


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 331  QGMISNYQEFKINKSLVKIRDLLFHKHVQLFTKNYY 224
            QG ++     K+N+   ++ D +   H+Q F K +Y
Sbjct: 1057 QGPMAAKHSTKVNEPAKELLDGINETHIQHFIKKFY 1092


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 244 LFTKNYYLLKISLYDSGERCEGI-VTCVGLLSDFFNSLNVTQMSLMTLMFFLKHFNELNQ 68
           +F   +  L  S++ + E+   I V+ + +L          Q    +L+FFL+H  E  +
Sbjct: 301 MFAVEFIELATSIWINTEKSYDITVSLIRMLYQLTGKCFQAQQIFRSLVFFLRHIEEFEE 360


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 78  SLKCFKKNISVISDI*VTLSELKKSLSKPT---QVTIPSHLS 194
           S KCF KN+S I D    LS++K+   +     Q+T+P  L+
Sbjct: 213 SEKCFSKNLS-IEDASEILSKVKEICPEGVYEGQLTLPGFLA 253


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 90  FKKNISVISDI*VTLSELKKSLSKPTQVTIPSHLSPLSYR 209
           F++N+ V+        E ++  ++   V +PS LSPL  R
Sbjct: 534 FRQNLDVVRSEAKKQIEAQREEARKGNVNMPSALSPLRIR 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,498
Number of Sequences: 5004
Number of extensions: 23628
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)