Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P18
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   2.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   2.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.8  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 187 CEGIVTCVGLLSDFFNSLNVTQMSLMTLM 101
           C G++T +  + DF +   + + SL+ L+
Sbjct: 86  CAGVITALNNVIDFLHDPGLMEASLIGLV 114


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 187 CEGIVTCVGLLSDFFNSLNVTQMSLMTLM 101
           C G++T +  + DF +   + + SL+ L+
Sbjct: 86  CAGVITALNNVIDFLHDPGLMEASLIGLV 114


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 291 RVWSKYEICYFTNTCNY 241
           +VW +Y    F  TC++
Sbjct: 192 KVWGRYTTEGFLTTCSF 208


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 131 CDSNVTYDTYVFFKTF 84
           C S   YD  VF+K +
Sbjct: 359 CPSMANYDRGVFYKNY 374


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -3

Query: 45  RLKEDWNAN 19
           R+++DWN+N
Sbjct: 357 RMEDDWNSN 365


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 291 RVWSKYEICYFTNTCNY 241
           +VW +Y    F  TC++
Sbjct: 192 KVWGRYTTEGFLTTCSF 208


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 156 SKPTQVTIPSHLSPLSYRL 212
           S PT  T+PS   P+  R+
Sbjct: 438 SMPTMPTMPSMAGPIRRRI 456


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 131 CDSNVTYDTYVFFKTF 84
           C S   YD  VF+K +
Sbjct: 449 CPSMANYDRGVFYKNY 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,876
Number of Sequences: 438
Number of extensions: 1498
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)