Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P17
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.19 
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    23   4.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   4.0  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    22   9.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    22   9.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   9.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    22   9.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 35  LFIQNYSDNII*AYCYLL-FKLVILNAIPFTMVNYNNFVYFC 157
           +FI  Y  N++  +C+   F L    +  FT +++N F   C
Sbjct: 95  IFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 166 ITNTKIYKIVIINHRKWN 113
           I NTK Y+++IIN    N
Sbjct: 33  IDNTKDYRVIIINDESLN 50


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 35   IFCLCRLPARG 3
            IFC CRLP  G
Sbjct: 1097 IFCFCRLPESG 1107


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 LNAIPFTMVNYNNFVYFC 157
           LNA PFT    ++ +YFC
Sbjct: 174 LNAWPFTAGCISSVLYFC 191


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 YY*YKNIQNCYN*PS 123
           YY ++++Q CYN P+
Sbjct: 517 YYFHEHLQPCYNDPN 531


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 30  EYYLFRIIQTISFERIVICYLN 95
           + Y F I +  SFE++ I Y+N
Sbjct: 414 DIYGFEIFENNSFEQLCINYVN 435


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 22   QRQNIIYSELFRQYHLSVLL 81
            QRQ I+Y  L RQ  ++ LL
Sbjct: 1094 QRQKILYQALRRQISIAELL 1113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,767
Number of Sequences: 5004
Number of extensions: 9814
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)