Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P17
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    26   3.1  
Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical p...    26   4.1  
U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical ...    25   7.1  
AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +2

Query: 80  YLLFKLVILNAIPFTMVNYNNFVY 151
           +++   V++ +IPF+++NYN+  +
Sbjct: 159 FIIISAVVIISIPFSLLNYNDIQF 182


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 74  YCYLLFKLVILNAIPFTMVNYNNFVYF 154
           +C +++ ++ +N  P  MVNYN+F+ +
Sbjct: 59  FCNIVYTILSMN-FPEFMVNYNSFIVY 84


>Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 29  RILFIQNYSDNII*AYCYLLFKLVILNAIPFTMVNYNNFVYF 154
           RI+    Y  N+I  + YL+F       IPFT   Y+   +F
Sbjct: 255 RIIQKDPYIQNLIYFFDYLVFPFTKDFKIPFTTTQYHRINHF 296


>Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 29  RILFIQNYSDNII*AYCYLLFKLVILNAIPFTMVNYNNFVYF 154
           RI+    Y  N+I  + YL+F       IPFT   Y+   +F
Sbjct: 255 RIIQKDPYIQNLIYFFDYLVFPFTKDFKIPFTTTQYHRINHF 296


>U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical
           protein C01G8.9b protein.
          Length = 661

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 64  HLSVLLSVI*ISDIECYSIYDG 129
           H+SV L+++ + D   Y IYDG
Sbjct: 266 HMSVSLNLVDLPDAIAYPIYDG 287


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
            C01G8.9a protein.
          Length = 1724

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 64   HLSVLLSVI*ISDIECYSIYDG 129
            H+SV L+++ + D   Y IYDG
Sbjct: 1329 HMSVSLNLVDLPDAIAYPIYDG 1350


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 130 NHRKWNSIQYH 98
           NHR W +I+YH
Sbjct: 132 NHRNWEAIEYH 142


>AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.10 protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  LLFKLVILNAIPFTMVNYNNFVYFCISN 166
           L+  +V LNA+ +  V    F+YFC+ +
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQH 32


>AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.9 protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  LLFKLVILNAIPFTMVNYNNFVYFCISN 166
           L+  +V LNA+ +  V    F+YFC+ +
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQH 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,749,281
Number of Sequences: 27780
Number of extensions: 52621
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)