Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P16
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   162   7e-41
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.21 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    28   2.0  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    27   3.4  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical p...    26   7.9  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion t...    26   7.9  
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific...    26   7.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  162 bits (394), Expect = 7e-41
 Identities = 71/120 (59%), Positives = 93/120 (77%)
 Frame = +3

Query: 24  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 203
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 204 ARVRKNTEARRKGRHCGFGKRRGTANARMPQEELWXXXXXXXXXXXXXXXTAKKIDRHLY 383
            R R+  EARRKGRH G+GKRRGTANARMP++ LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 120  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 254
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 245
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 233  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 117
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 1282 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
            homologous cationchannel protein protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 233  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 117
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 891  AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 332 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQT 165
           TE    L P    W+S  + +   T ATVTS       F++    +DS+   D  T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 144 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQE 299
           I K++KD  V+K  +A+  R   R   +          GK++G A +R P E
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTPLE 158


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 144 IRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQE 299
           I K++KD  V+K  +A+  R   R   +          GK++G A +R P E
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTPLE 158


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 244 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 116
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 244 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 116
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 48  RLAASVMRCGKKKVWLDPNEI 110
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 178 LMTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFRELIL 20
           L+  PS  IL  FC  L  A S++    +  +F  +       LFC+ R LIL
Sbjct: 86  LVRIPSTTILTYFCATLDPAESIVPLLVAVYYFSNYSSQLYTVLFCSTRTLIL 138


>Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical
           protein F41D3.6 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 203 AGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHL 84
           AG DSN+ +   + +DHL  +  G+      D  W+K H+
Sbjct: 204 AGTDSNYTI---SAIDHLRSLYHGVIFIMSNDPKWVKVHI 240


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +3

Query: 120 ANTNSRQNIR-KMIKDGLVIKKPV------AVHSRARVRKNTEARRKGR 245
           A   +R ++R KM  DG VI+KP       ++HS     K++E    GR
Sbjct: 91  AMRETRSSLRTKMAVDGTVIEKPKRRHFFNSIHSHLNSTKHSETENSGR 139


>U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion
           transporter protein 1 protein.
          Length = 526

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 215 ANTSAGMDSNWFLD--DQTILDHLTDVLSGISISDFIDLVW 99
           ++TS+  D N+  D  DQ +L+ LT      S+ D ++L W
Sbjct: 5   SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 42  QKRLAASVMRCGKKKVWLDPNEI 110
           Q ++A + + CG   +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343


>AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific
           organic anion transporterprotein.
          Length = 526

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 215 ANTSAGMDSNWFLD--DQTILDHLTDVLSGISISDFIDLVW 99
           ++TS+  D N+  D  DQ +L+ LT      S+ D ++L W
Sbjct: 5   SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,993
Number of Sequences: 27780
Number of extensions: 160156
Number of successful extensions: 520
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)