Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P16
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   6.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 8   RHEGQDEFPKVTEEACSLCY 67
           RH+ Q  F  +    C+LC+
Sbjct: 389 RHKEQQHFQPLNSAVCALCH 408


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 20  QDEFPKVTEEACSLC 64
           +DEF +  +  CSLC
Sbjct: 263 EDEFDEFGDSKCSLC 277


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 142 FCLELVLAISLISFGSSHTFFLPHRITEAASL 47
           + + L+L   LISF     F+LP    E  +L
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTL 267


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 271 VQLMLECHKKNYGFKGK 321
           VQL +EC  K + F  K
Sbjct: 59  VQLYIECAMKKFSFVDK 75


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 162 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQE 299
           +GL+    V   S A  R      RK     FG+ + T  + +P +
Sbjct: 221 EGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQ 266


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 199 EWTATGFLMTRPSLIILRMFCLELVLAISL 110
           +W     ++ R  LII  +F +   +A+ L
Sbjct: 518 DWKFAAMVIDRMCLIIFTLFTIIATIAVLL 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,659
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)