Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P14
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 1.1
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 1.1
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 23 4.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 23 4.3
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 23 5.6
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 23 7.5
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 22 9.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 22 9.9
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 22 9.9
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 22 9.9
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 22 9.9
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 137 TVKFDPFGDNVTHTRNFLHYISSQKINLTNPNCSLK 244
+V P DNV R +SS++INL PN S K
Sbjct: 987 SVLIKPKADNVILFRLKRFIMSSEEINLDIPNLSTK 1022
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 1.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 113 NLKAAKRITVKFDPFGDNVTHTRNFLHYISSQKINLTNPNCS 238
++KAA RI F F + H R+ H + +I +PN +
Sbjct: 145 SMKAAYRIRKTFLSFSKMMEHVRDVQHKKETGEIKSLSPNAT 186
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 23.4 bits (48), Expect = 4.3
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Frame = +2
Query: 29 LGMSIPFSGTFRRSGGVVSAIGKQLRA---VNLKAAKRI------TVKFD---PFGDNVT 172
+G +P+ T RR+G VV+ RA + K ++ I T ++ P+G ++T
Sbjct: 290 VGRDLPYKVTPRRAGDVVNLTANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLT 349
Query: 173 HTRNF 187
HT+ +
Sbjct: 350 HTKTY 354
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 33 VCLYLLVVHFEDQEVLFLQ 89
VCLY +H E +E FLQ
Sbjct: 1061 VCLYSANMHMEFREKFFLQ 1079
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 170 THTRNFLHYISSQKINLTNPN 232
THTR Y S+K NPN
Sbjct: 499 THTRCIWDYFLSRKDEFKNPN 519
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 22.6 bits (46), Expect = 7.5
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 74 GVVSAIGKQLRAVNLKAAKRITVKFDPFGDNVTHTRNFLH 193
GVV + + ++ +NL+ ++ KF+ D+V +++
Sbjct: 72 GVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMN 111
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 165 LSPKGSNFTVILFAAFK 115
+ PKG NF V F FK
Sbjct: 45 VEPKGKNFVVRFFDDFK 61
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 78 TPPDLRNVPLKGIDIPN 28
TPPD+ + PL IPN
Sbjct: 650 TPPDVSHAPLISRIIPN 666
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 229 RICEIYFL*TYIMKEIPCMSNVISKRIKFHGNSF 128
R + ++L +Y+MK+ P + KFH F
Sbjct: 320 RYSDFFWLHSYLMKKYPFRRVPLIPLKKFHSKCF 353
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 178 CMSNVISKRIKFHGNSFRCF 119
C ISK+I ++ S+ CF
Sbjct: 224 CRQKSISKKIAYYLYSYECF 243
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 22.2 bits (45), Expect = 9.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Frame = +2
Query: 68 SGGVVSAIGKQLRAVN----LK--AAKRITVKFDPF 157
SGGV+S IGK + A + LK K ++K DP+
Sbjct: 7 SGGVISGIGKGVIASSTGLLLKTLGLKVTSIKIDPY 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,484
Number of Sequences: 5004
Number of extensions: 12920
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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