Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P14
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1065 - 27316270-27317032,27317062-27317189                       27   1.6  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    27   2.8  
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819...    25   6.4  
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    25   8.5  

>06_03_1065 - 27316270-27317032,27317062-27317189
          Length = 296

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 113 NLKAAKRITVKFDPFGDNVTHTRNFLHYISSQKINLTNPNCSL 241
           NL  A R   KF+  G + T       ++SS+++ +  P C+L
Sbjct: 6   NLTQAARAVHKFNVNGYSATKAMAKHEHVSSKRLTVAGPRCAL 48


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 62  RRSGGVVSAIGKQLRAVNLKAAKRITVKFDPFGDNVTHTRNFLHYISSQKINL 220
           RR GG  +A  + +  + L AA R T +  P G + T  R     +S  + +L
Sbjct: 6   RRGGGASAAFDRSVFPILLAAAARSTHRRTPHGSDSTVARLLRRALSRSRPSL 58


>02_05_0833 +
           32080845-32081118,32081483-32081663,32081825-32081999,
           32082088-32082220,32082303-32082373,32082738-32082821,
           32083106-32083196,32083315-32083835,32083932-32084096,
           32084181-32084399,32084859-32084986,32085104-32085293,
           32085478-32085561,32085643-32085740,32086127-32086391,
           32086511-32086673,32086792-32086972,32087299-32087370,
           32087473-32087614
          Length = 1078

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 156 KGSNFTVILFAAFKFTARSCLPIAETTPPDLRNV 55
           KGS  T +   AF +  R+C P+A T   D  N+
Sbjct: 184 KGSLHTFL--NAFTYPDRTCYPVASTNAKDFYNL 215


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 74  GVVSAIGKQLRAVNLKAAKRITVK 145
           GV +A+GKQLR+ N     R T+K
Sbjct: 302 GVENALGKQLRSKNPLNNARATIK 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,001,447
Number of Sequences: 37544
Number of extensions: 71291
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)