Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P14
         (244 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphat...    29   2.1  
BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein.        29   3.6  

>X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphatase
           protein.
          Length = 1452

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
 Frame = +2

Query: 95  KQLRAVNLKAAKRITVKFDPFGDNVT--HTRNF-LHY 196
           ++L  V +K+ ++IT++++PFG NVT  H+ N  +HY
Sbjct: 384 RKLEVVEVKS-RQITIRWEPFGYNVTRCHSYNLTVHY 419


>BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein.
          Length = 1390

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +2

Query: 95  KQLRAVNLKAAKRITVKFDPFGDNVT--HTRNF-LHY 196
           ++L  V +K+ ++IT+ ++PFG NVT  H+ N  +HY
Sbjct: 322 RKLEVVEVKS-RQITISWEPFGYNVTRCHSYNLTVHY 357


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,271,782
Number of Sequences: 237096
Number of extensions: 364028
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1388364868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)