Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P14
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    42   8e-05
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U00050-3|AAL02480.1|  556|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty ...    25   7.1  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    25   7.1  
AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty...    25   7.1  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    25   7.1  
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    25   9.4  
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 104 RAVNLKAAKRITVKFDPFGDNVTHTRNFLHYISSQKINLTNPNCSLK 244
           RA+NL+  K I +  DP   +    R F H I + K+ LTNPN  +K
Sbjct: 25  RALNLQKVKSIDISLDPLHHDNLSIRTFWHSIMAPKVRLTNPNVRVK 71


>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
           protein W10C6.1 protein.
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 134 ITVKFDPFGDNVTHTRNFLHYISSQ 208
           ++V+ DP G+   HT++ LH   SQ
Sbjct: 350 LSVELDPNGEGFVHTQDLLHAFHSQ 374


>U00050-3|AAL02480.1|  556|Caenorhabditis elegans Hypothetical
           protein F09F7.5c protein.
          Length = 556

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 132 LFAAFKFTARSCLPIAETTPP 70
           L  AF F    C+PI ++TPP
Sbjct: 204 LGGAFSFGLDDCIPIVKSTPP 224


>U00050-2|AAL02479.1|  582|Caenorhabditis elegans Hypothetical
           protein F09F7.5b protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 132 LFAAFKFTARSCLPIAETTPP 70
           L  AF F    C+PI ++TPP
Sbjct: 203 LGGAFSFGLDDCIPIVKSTPP 223


>U00050-1|AAA50697.1|  583|Caenorhabditis elegans Hypothetical
           protein F09F7.5a protein.
          Length = 583

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 132 LFAAFKFTARSCLPIAETTPP 70
           L  AF F    C+PI ++TPP
Sbjct: 204 LGGAFSFGLDDCIPIVKSTPP 224


>Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.7 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 220 EIYFL*TYIMKEIPCMSNVISKRIKFHGNSFRCF*IYCS*LFTYCRNNTS*SS 62
           E Y L   +M   P +SN  S + K   +S +    +CS LF YC+ N S S+
Sbjct: 240 EEYLLLILVMFCNPSISNDFSDKTKLALSSHQQ--AFCSALFRYCQINYSKSA 290


>Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical
           protein T13F2.1 protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 93  PIAETTPPDLRNVPLKGIDIPNV 25
           P  E   PD+++ P+KGID  N+
Sbjct: 70  PTQEPEIPDIKDDPIKGIDDVNM 92


>Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical
           protein C05B5.3 protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 32  GMSIPFSGTFRRSGGVVSAIGKQLRAVNLKAAKRITVKFDPFGDNVTHTRNFLHYISSQ- 208
           G ++ F G     GG   A G Q   +    A++I V+     DN++ TRN  +Y+ +Q 
Sbjct: 332 GQAVQFVG----GGGSGGAPGSQSVPMT-DEAQQIAVQIQAIRDNLSITRNESNYLINQL 386

Query: 209 KINL 220
           K++L
Sbjct: 387 KLSL 390


>AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty
           acid desaturase protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 93  PIAETTPPDLRNVPLKGIDIPNV 25
           P  E   PD+++ P+KGID  N+
Sbjct: 70  PTQEPEIPDIKDDPIKGIDDVNM 92


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 62  RRSGGVVSAIGKQLRAVNL-KAAKRITVKFDPFG 160
           R    +V  +  QL++  +    ++I++KFDPFG
Sbjct: 416 RNDSIIVDTLHGQLKSTLICPVCEKISIKFDPFG 449


>AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty
           acid desaturase protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 93  PIAETTPPDLRNVPLKGIDIPNV 25
           P  E   PD+++ P+KGID  N+
Sbjct: 70  PTQEPEIPDIKDDPIKGIDDVNM 92


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 149 DPFGDNVTHTRNFLHYISSQKINLTNP 229
           DP     + TRN+L +++S    LT+P
Sbjct: 438 DPHSSEFSVTRNYLEWLTSVPWGLTSP 464


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 153 GSNFTVILFAAFKFTARSCLPIAETTPPD 67
           G ++T  +FA F F A S + +AE   P+
Sbjct: 244 GYHYTKRMFAEFGFPASSFISVAEQQDPN 272


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 153 GSNFTVILFAAFKFTARSCLPIAETTPPD 67
           G ++T  +FA F F A S + +AE   P+
Sbjct: 244 GYHYTKRMFAEFGFPASSFISVAEQQDPN 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,661,892
Number of Sequences: 27780
Number of extensions: 71239
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)