Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P14
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 68  SGGVVSAIGKQLRAVN 115
           +GG +S IG++L+ ++
Sbjct: 216 TGGTISGIGRKLKELS 231


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 96  LPIAETTPPDLRNVPLKG 43
           L +AE  PP    VPL G
Sbjct: 283 LLLAEIIPPTSLTVPLLG 300


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 203 NLYNEGNSLYE*RYLQKDQISR 138
           N+YN G    E      DQI+R
Sbjct: 76  NVYNRGVQRLEAMLFAVDQINR 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,675
Number of Sequences: 438
Number of extensions: 1095
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)