Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P13
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   2.5  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    25   2.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   3.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   5.9  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    24   7.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    24   7.8  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 125 ENEGPVTKSIRLTAALILRNIVIYSNTGRRQLRSYEAHLAAIALSSVEASRTIAQVL 295
           +++G  T  I LTA L+LRN+V  S  G+    + E+ +  ++  +   +  ++++L
Sbjct: 722 DDQGDAT-GIALTATLVLRNLV-RSKQGKMLFSAIESRVLEVSSLNPAVAPYVSEML 776


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 166 GCQSYALSNWTFVFIHELPRI 104
           GC  YA +NWT  F ++  RI
Sbjct: 419 GCGPYAKTNWTCDFSYDYVRI 439


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 TIAQVLYDMNNI*ESPKGQHRPGH 349
           T    L  +NN   +PKG H+P H
Sbjct: 247 TTLSKLAPINNSKSAPKGTHKPNH 270


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 209 RRQLRSYEAHLAAIALSSVE 268
           RR  RSY AH+  ++LSS +
Sbjct: 444 RRPARSYPAHIPLMSLSSTK 463


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -1

Query: 229  VRTKLTSSSIRVYNNISENKSGCQSYALSNWT-----FVFIHELPR--IEHVGGVLVKRS 71
            + T  T  S  + N I E+    +SY+ S W      F  + ELP+  +  V  ++ K  
Sbjct: 967  INTNETLESTSIVNEIEESAVQTKSYSESMWNKTVTMFPSLQELPQNYMSEVPSMMQKAM 1026

Query: 70   QSRVRRIA 47
             S ++ I+
Sbjct: 1027 LSTLKSIS 1034


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 199 RVYNNISENKSGCQSYALSNWTFVFIHELPR 107
           ++Y++I  N+    + A +N  F F  ELPR
Sbjct: 736 KLYSSIDVNQRSPLASAKTNGNFTFHAELPR 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,076
Number of Sequences: 5004
Number of extensions: 20820
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)