Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P13
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0244 - 15772156-15773964,15774190-15774711                       29   1.3  
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477     28   2.3  
06_03_0363 + 19904002-19905792                                         27   5.3  
10_08_1046 + 22542074-22544749,22544837-22545544                       26   7.1  
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581...    26   7.1  
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519     26   9.3  

>03_03_0244 - 15772156-15773964,15774190-15774711
          Length = 776

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 214 TSSSIRVYNNISENKSGCQSYALSNWTFVFIHELPRIEHVGGVLVKRSQSRVRRIAHRRG 35
           TS+S    NNISEN S  QS  LS+ +     ++   E++     K++++  R  +  RG
Sbjct: 82  TSTSKTEVNNISENGSTNQSTMLSDESRTKEDKMNHHENIAATTNKKAETDARPESPYRG 141

Query: 34  FV 29
            +
Sbjct: 142 LI 143


>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
          Length = 486

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 142 NWTFVFIHELPRIEHVGGVLVKRSQSRVRRIA 47
           NW F   H LP  + V G+L+  S  RVR  A
Sbjct: 38  NWGFSSSHPLPAAQVVRGLLLPNSVPRVRLAA 69


>06_03_0363 + 19904002-19905792
          Length = 596

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 158 LTAALILRNIVIYSNTGRRQLRSYEAHLAAIALSSVEAS 274
           +  AL++R   +   T   QLR++ A LA + LSS+  S
Sbjct: 438 VAVALLVRRYHVAGATTPGQLRTFLAFLALVVLSSIGVS 476


>10_08_1046 + 22542074-22544749,22544837-22545544
          Length = 1127

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 95  RRRAC*AQPKPRSEDSSQTWVC*IPLRPRPR 3
           RR A      PRS+D +  W C +P R R R
Sbjct: 688 RRIALYGFDPPRSKDHTTPWSCCLPRRRRTR 718



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 104 NPRELMDENEGPVTKSIRLTAALI 175
           +P+ELM +   P+T+ +R+ AA+I
Sbjct: 240 HPKELMSKPWRPLTRKLRIQAAVI 263


>10_02_0145 -
           5817684-5817751,5817850-5817955,5818145-5818222,
           5818334-5818380,5818476-5818557,5818688-5818829,
           5819027-5819142,5819244-5819318,5819413-5819531,
           5820569-5820636,5820739-5820803,5820887-5820968,
           5821462-5821514,5821589-5821711,5821986-5822054,
           5822581-5822649,5822735-5822786,5823423-5823475,
           5823562-5823654,5823762-5823806,5824616-5824777
          Length = 588

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 160 QSYALSNWTFVFIHELPRIEHVGGVLVKRSQSR 62
           Q   L+NW     + LP  ++VGG LV     R
Sbjct: 60  QENYLANWIQALFNSLPPEDYVGGTLVLGGDGR 92


>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
          Length = 236

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 169 SGCQSYALSNWTFVFIHELPRIEHVGGVLVKRSQS 65
           S  Q+Y +++   VF++E P++   G + +K S S
Sbjct: 85  SDVQTYVINSARVVFLNERPQLRGCGVLAIKSSPS 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,597,813
Number of Sequences: 37544
Number of extensions: 142086
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)