Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P13
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    77   3e-15
Z82053-4|CAB04831.1|  158|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    28   2.1  
AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormo...    28   2.1  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    28   2.1  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    26   8.5  

>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 36/69 (52%), Positives = 53/69 (76%)
 Frame = +2

Query: 101  FNPRELMDENEGPVTKSIRLTAALILRNIVIYSNTGRRQLRSYEAHLAAIALSSVEASRT 280
            F  REL DE EGPVTKSIRLT+ LILRN+  YS  GR++LR +E+H+  +ALS +E++  
Sbjct: 1060 FLSRELTDEAEGPVTKSIRLTSCLILRNLARYSAEGRQKLRRHESHICWLALSRLESAHA 1119

Query: 281  IAQVLYDMN 307
            ++Q+L +++
Sbjct: 1120 LSQLLSELH 1128


>Z82053-4|CAB04831.1|  158|Caenorhabditis elegans Hypothetical
           protein T26E3.5 protein.
          Length = 158

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = -1

Query: 202 IRVYNNISEN----KSGCQSYALSNWTFVFIHELPRIEHVGGVLVKRSQSRVRRIAHR 41
           I V N +SE      + C++ +L++ T + I  L + +H+GGV+   S++ + ++AHR
Sbjct: 86  IYVGNELSEKGRRRPTNCRNDSLNSSTVLHIL-LHKPKHIGGVVRDYSETTLMQVAHR 142


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 217 LTSSSIRVYNNISENKSGCQSYALSNWTFVFIHELPRIEHVGGVLVK 77
           LTS ++ VY+N S +   C +Y      + FI      E V   LVK
Sbjct: 263 LTSDTLIVYDNFSSDLDYCSTYPFEEMKYFFIPREMFHEDVISELVK 309


>AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform a protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 217 LTSSSIRVYNNISENKSGCQSYALSNWTFVFIHELPRIEHVGGVLVK 77
           LTS ++ VY+N S +   C +Y      + FI      E V   LVK
Sbjct: 177 LTSDTLIVYDNFSSDLDYCSTYPFEEMKYFFIPREMFHEDVISELVK 223


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 217 LTSSSIRVYNNISENKSGCQSYALSNWTFVFIHELPRIEHVGGVLVK 77
           LTS ++ VY+N S +   C +Y      + FI      E V   LVK
Sbjct: 275 LTSDTLIVYDNFSSDLDYCSTYPFEEMKYFFIPREMFHEDVISELVK 321


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  KRSQSRVRRIAHRRGFVRFHFDR 11
           KRSQS +  + H++G    ++DR
Sbjct: 64  KRSQSMIASVIHKKGEFHMNYDR 86


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 344 RAYVALWAILKYYSYRKG 291
           RA++  WA+  YY+Y KG
Sbjct: 211 RAWLMHWALFVYYNYPKG 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,094,309
Number of Sequences: 27780
Number of extensions: 117897
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)