Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P10
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   3.1  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    24   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   3.1  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    23   4.1  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    23   5.4  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    23   7.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    23   7.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 56   LKTDEGVFGSYISGILDSEDNADD 127
            +K ++ VFG Y+SG     DN D+
Sbjct: 4753 VKQEDVVFGIYVSGRTLDVDNIDE 4776


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 99  IPEM*LPKTPSSVFNDLNFSINHGSNSL 16
           + ++  P+ P+S F  LN+  +HG   L
Sbjct: 63  VKDLATPRDPTSYFTFLNYLHSHGQERL 90


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 84  LPKTPSSVFNDLNFSINHGSN 22
           LPKTPS  F D  F     SN
Sbjct: 772 LPKTPSGEFGDNEFMFPKKSN 792


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  GSYISGILDSEDNADDKKDALEGILS 157
           G+YI G+ DSE+ A     +   +LS
Sbjct: 113 GNYIEGVYDSEEEAPHMLFSSSSLLS 138


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 81  PKTPS-SVFNDLNFSINHGSN 22
           P  PS S+F++L+F I+ G+N
Sbjct: 492 PTRPSASIFDNLSFDIHPGTN 512


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 59   KTDEGVFGSYISGILDSEDNADDKKDALEGILSE 160
            +TDE   G   S +LDSED   D +  L   L E
Sbjct: 915  ETDEESSGLEESDLLDSEDEDIDNEMQLSRELDE 948


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  PWLIEKLRSLKTDEGVFGSYISGILDS 109
           PW+I +   LKT   +F SY  GI  S
Sbjct: 101 PWIIGEAGVLKTLLMLFISYAVGIFTS 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,728
Number of Sequences: 5004
Number of extensions: 7002
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)