Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P10
(168 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0032 + 387228-387374,388775-388934,389023-389156,389375-38... 29 0.67
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 27 1.5
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 2.7
06_01_0856 - 6495222-6495548,6496046-6496440,6496573-6496914,649... 26 3.6
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 26 4.7
09_03_0086 + 12230402-12231526 26 4.7
06_03_0846 - 25328224-25330613,25330716-25330794 25 6.2
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 25 6.2
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 25 6.2
11_06_0074 - 19821699-19823702 25 8.2
04_04_0381 - 24839505-24839918,24840009-24840779,24841369-248417... 25 8.2
04_01_0166 - 1861750-1862181,1862317-1863873 25 8.2
>04_01_0032 +
387228-387374,388775-388934,389023-389156,389375-389584,
389897-390007,390848-391108
Length = 340
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 41 EKLRSLKTDEGVFGSYISGILDSEDNA 121
EKL SLK EGV G YIS +D D A
Sbjct: 249 EKLESLKLGEGVKGVYISVDVDCLDPA 275
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 71 GVFGSYISGILDSEDNA 121
GVFGS+ GI+DS NA
Sbjct: 143 GVFGSFTKGIVDSSKNA 159
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 17 SEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADD 127
S E WLI KLR K D Y SG L S D+
Sbjct: 547 SHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDE 583
>06_01_0856 -
6495222-6495548,6496046-6496440,6496573-6496914,
6496992-6497129,6497426-6497502,6497585-6497656,
6498025-6498075,6498458-6498529,6498614-6498746,
6498869-6498947
Length = 561
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 NSARGSEFEP--WLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGIL 154
N + E +P W ++ L+SL+ ++G+ ISG + SE D + L GI+
Sbjct: 75 NQSLSGELKPDIWQLQALQSLE----LYGNSISGKIPSELGRDLSHNNLSGII 123
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 32 WLIEKLRSLKTDEGVFG-SYISGILDSEDNA 121
WL+ KL+ LK D G G + G+L S+ NA
Sbjct: 309 WLVTKLKELK-DSGCIGVVHEIGVLSSDRNA 338
>09_03_0086 + 12230402-12231526
Length = 374
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 29 PWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKD 136
P+L LRSL+ FGS + S D+ DD D
Sbjct: 180 PFLGGALRSLRLKVRCFGSLHGAVESSTDDEDDDDD 215
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 77 FGSYISGILDSEDNADDKKD 136
F S ISG+ D E+N+D++ D
Sbjct: 344 FRSQISGLKDREENSDNQTD 363
>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +2
Query: 17 SEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDK 130
S+F+ W E+L+ + ++ + G+ S DD+
Sbjct: 1185 SQFKAWKREELKKITKEKNALAERLKGVEASRKRVDDE 1222
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 41 EKLRSLKTDEGVFGSYISGILDSEDNADDKKDALE 145
E LRS+K +EG +I+ + + + + DDK +L+
Sbjct: 73 EALRSIKLEEGRLLIHIADLYEMKRSLDDKITSLK 107
>11_06_0074 - 19821699-19823702
Length = 667
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 68 EGVFGSYISGILDSEDNADDKKDALEGILSE 160
+G FG G+LD ED+ K + G L E
Sbjct: 49 KGGFGEVFRGVLDDEDDVVAVKRYIRGDLRE 79
>04_04_0381 -
24839505-24839918,24840009-24840779,24841369-24841730,
24842452-24842830
Length = 641
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 84 LPKTPSSVFNDLNFSINHGSNSLPRAE 4
LPK + ++ L+FS+ N LP AE
Sbjct: 375 LPKNAKAFYSILDFSVFSWDNKLPGAE 401
>04_01_0166 - 1861750-1862181,1862317-1863873
Length = 662
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 5 SARGSEFEPWLIEKLRSLKTDEGV 76
+A ++ EP+L+E++R LK +G+
Sbjct: 373 AAAATDGEPFLVEEMRVLKETKGI 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,156
Number of Sequences: 37544
Number of extensions: 37809
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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