Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P10
         (168 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047776-1|AAH47776.1|  227|Homo sapiens CCDC43 protein protein.       47   1e-05
AK056357-1|BAB71162.1|  224|Homo sapiens protein ( Homo sapiens ...    47   1e-05

>BC047776-1|AAH47776.1|  227|Homo sapiens CCDC43 protein protein.
          Length = 227

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = +2

Query: 14  GSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILS 157
           G  F  WL  +L +L  D  V+G+YI GIL  E+  ++K DAL+GILS
Sbjct: 19  GGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEE-EEKLDALQGILS 65


>AK056357-1|BAB71162.1|  224|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31795 fis, clone NT2RI2008812. ).
          Length = 224

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = +2

Query: 14  GSEFEPWLIEKLRSLKTDEGVFGSYISGILDSEDNADDKKDALEGILS 157
           G  F  WL  +L +L  D  V+G+YI GIL  E+  ++K DAL+GILS
Sbjct: 19  GGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEE-EEKLDALQGILS 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,361
Number of Sequences: 237096
Number of extensions: 205380
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 76,859,062
effective HSP length: 35
effective length of database: 68,560,702
effective search space used: 1371214040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)