Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P10
         (168 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    25   5.4  
U22831-7|AAK20065.1|  140|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 26  EPWLIEKLRSLKTDEGVFGSYISGILDSEDN 118
           EPW ++K  S K DEGV    + G LD+ +N
Sbjct: 485 EPWFVQKPDSKKEDEGVL--IVRG-LDTAEN 512


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 26  EPWLIEKLRSLKTDEGVFGSYISGILDSEDN 118
           EPW ++K  S K DEGV    + G LD+ +N
Sbjct: 485 EPWFVQKPDSKKEDEGVL--IVRG-LDTAEN 512


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 77  FGSYISGILDSEDNADDKKD 136
           FG+YI   LDS+D+A D  D
Sbjct: 9   FGNYIGPELDSDDDAGDIDD 28


>U22831-7|AAK20065.1|  140|Caenorhabditis elegans Hypothetical
           protein F47D12.3 protein.
          Length = 140

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  EFLVATFQVF*IVKITQMIKKMPWKVYYRR 161
           E LVA  + F + K  +M+KK  WK+  +R
Sbjct: 101 ESLVAEAEFFGLEKYREMLKKKLWKLTGKR 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,523
Number of Sequences: 27780
Number of extensions: 35440
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)