Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P09
(360 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 210 7e-54
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 202 1e-51
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 202 1e-51
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 188 3e-47
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 164 5e-40
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 162 1e-39
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 151 4e-36
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 149 1e-35
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 143 9e-34
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 9e-29
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 120 1e-26
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 120 1e-26
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 99 2e-20
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 97 6e-20
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 90 1e-17
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 89 3e-17
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 88 5e-17
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 86 2e-16
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 81 8e-15
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 79 2e-14
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 78 5e-14
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 72 3e-12
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 71 6e-12
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 71 8e-12
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 70 1e-11
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 67 8e-11
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 67 8e-11
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 67 1e-10
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 62 3e-09
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 57 1e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 6e-07
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 52 2e-06
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 52 3e-06
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.010
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 0.86
UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;... 33 1.5
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 2.0
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 2.0
UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1; ... 32 2.6
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 32 2.6
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 2.6
UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1; Lactoba... 32 3.5
UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep... 32 3.5
UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n... 31 4.6
UniRef50_Q55CU6 Cluster: Putative uncharacterized protein; n=1; ... 31 4.6
UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1; ... 31 4.6
UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like pr... 31 4.6
UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella ve... 28 4.9
UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 31 6.1
UniRef50_Q65LR0 Cluster: YhgE; n=1; Bacillus licheniformis ATCC ... 31 6.1
UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomo... 31 6.1
UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1; ... 31 6.1
UniRef50_A7EU93 Cluster: Putative uncharacterized protein; n=2; ... 31 6.1
UniRef50_Q05223 Cluster: Major head protein Gp17; n=5; Siphoviri... 31 8.0
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 210 bits (512), Expect = 7e-54
Identities = 95/113 (84%), Positives = 103/113 (91%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK E FRL+YDVKGRF IHR
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHR 113
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 202 bits (493), Expect = 1e-51
Identities = 92/112 (82%), Positives = 100/112 (89%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
KI QR IK+DGKVRTD TYP GFMDV+SI+K E FRLIYDVKGRFT+HR
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHR 113
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 202 bits (493), Expect = 1e-51
Identities = 92/113 (81%), Positives = 100/113 (88%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
V KI QR IK+DGKVRTD TYPAGFMDV+SI+K E FRLIYD KGRF +HR
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHR 113
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 188 bits (458), Expect = 3e-47
Identities = 86/112 (76%), Positives = 96/112 (85%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIH 356
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI K NE FRL+YD KGRF +H
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLH 112
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 164 bits (398), Expect = 5e-40
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
V IVK R IK+DGK+RTD YP GFMDV+SI + E FRL+Y+ K RF +
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCL 111
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 162 bits (394), Expect = 1e-39
Identities = 75/116 (64%), Positives = 89/116 (76%)
Frame = +3
Query: 9 VLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYAL 188
VLF M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYAL
Sbjct: 11 VLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYAL 70
Query: 189 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIH 356
T E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H
Sbjct: 71 TAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVH 126
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 151 bits (366), Expect = 4e-36
Identities = 75/113 (66%), Positives = 86/113 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDE 70
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
V KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HR
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHR 123
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 149 bits (361), Expect = 1e-35
Identities = 69/106 (65%), Positives = 79/106 (74%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 215
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 216 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
+Q L+ VD R D YPAGFMDVV I K + FRL+YDVKGRF +
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFAL 108
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 143 bits (346), Expect = 9e-34
Identities = 64/113 (56%), Positives = 84/113 (74%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
L I+K+ I VDGKVR D +PAG MDV+SI+ E +R++YD G F +HR
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHR 113
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect(2) = 9e-29
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGK 245
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 21.8 bits (44), Expect(2) = 9e-29
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 330 DVKGRFTIHR 359
D KGRF +HR
Sbjct: 76 DTKGRFAVHR 85
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 120 bits (288), Expect = 1e-26
Identities = 69/145 (47%), Positives = 87/145 (60%), Gaps = 31/145 (21%)
Frame = +3
Query: 12 LFNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----A 104
++ ARGPKKHLKR+NAPK+WML+ KL +Y A
Sbjct: 79 IYKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQA 138
Query: 105 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGF 278
RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 139 TRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGL 198
Query: 279 MDVVSIEKANELFRLIYDVKGRFTI 353
MDVV IEK ++ FR++YD KGRF +
Sbjct: 199 MDVVRIEKTDQSFRILYDTKGRFVL 223
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 120 bits (288), Expect = 1e-26
Identities = 55/113 (48%), Positives = 76/113 (67%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
+ I+ ++ IKV+G+VRT+ +P G DVVSIEK E FR++Y+V +F +HR
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHR 113
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 99.1 bits (236), Expect = 2e-20
Identities = 45/111 (40%), Positives = 70/111 (63%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ +
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK 114
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 97.5 bits (232), Expect = 6e-20
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
KI+ + I VDG VR +P +P G MDVV I + + +R++ + R +
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDV 115
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 89.8 bits (213), Expect = 1e-17
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +3
Query: 42 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+ +KVDG VR D +P G MDV+ I E++R++ D
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPD 100
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/110 (35%), Positives = 61/110 (55%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 209
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 210 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
I+ + VDG+V D +P GFMD++ I K E++R++ D KGR +++
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNK 114
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 87.8 bits (208), Expect = 5e-17
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+KVDGKVR D YP G MDV+ + NE +R+I D
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPD 99
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 85.8 bits (203), Expect = 2e-16
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Frame = +3
Query: 21 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 197
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 198 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI-YDVKGRFTIH 356
E K++ + +VDG VR D +P GFMDV+ + E FR++ Y VK F +H
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLH 113
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 80.6 bits (190), Expect = 8e-15
Identities = 39/102 (38%), Positives = 60/102 (58%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+I+ R+I+VDG+V TD +P G MDV+ I + +R++ D
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPD 107
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 79.0 bits (186), Expect = 2e-14
Identities = 37/102 (36%), Positives = 57/102 (55%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 347
+ VDGKVR D Y G D +SI N +R++ + G+F
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF 106
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 77.8 bits (183), Expect = 5e-14
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
+ VDG R D +P G DV+++ NE +R++ D KGR +++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYK 108
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 72.1 bits (169), Expect = 3e-12
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 212
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKK 114
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 70.9 bits (166), Expect = 6e-12
Identities = 31/106 (29%), Positives = 55/106 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
+ VDG R D +P G MD+++I N +R++ D K R +++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNK 109
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 70.5 bits (165), Expect = 8e-12
Identities = 34/101 (33%), Positives = 56/101 (55%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 344
R + VDG++ TD G MDV+++ + FR I DV G+
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV--GEDSFRCILDVNGK 103
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 69.7 bits (163), Expect = 1e-11
Identities = 39/97 (40%), Positives = 51/97 (52%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+ VDGKVR D YP G MDVV I A+ R+I D
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPD 99
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 67.3 bits (157), Expect = 8e-11
Identities = 37/101 (36%), Positives = 56/101 (55%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKG 341
QR + V+G+ D G D+VSI K + +R+ DVKG
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKG 102
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 67.3 bits (157), Expect = 8e-11
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 344
+ ++G + TD D++S K ++ + ++ D KGR
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGR 102
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 66.9 bits (156), Expect = 1e-10
Identities = 30/104 (28%), Positives = 57/104 (54%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I +
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQ 110
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 62.1 bits (144), Expect = 3e-09
Identities = 32/112 (28%), Positives = 57/112 (50%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIH 356
K+VK + V+GK +P MD +S AN+ +R++ G+ T++
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVY 112
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 56.8 bits (131), Expect = 1e-07
Identities = 28/104 (26%), Positives = 51/104 (49%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
+ ++GK +D P G D+++ + E +R+ GR +
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLAL 106
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.4 bits (125), Expect = 6e-07
Identities = 29/102 (28%), Positives = 52/102 (50%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
+KVDGK + + GFMDV+ I E +R++Y+ +G +
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVL 105
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 52.4 bits (120), Expect = 2e-06
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTI 353
+ VDGKV + GFMD +++ N+ + + YD KG+ I
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV-SGND-YLVSYDRKGKLVI 105
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 52.0 bits (119), Expect = 3e-06
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI 326
++VDG RT + G MDVV + +++R++
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMV 103
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.010
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 114 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 293
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 294 IEKANELFRLIYDVKG 341
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 0.86
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 72 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 251
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 252 TDPT-YPAGFMDVVSIEKANELFRLIYDVKG 341
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;
Moritella sp. PE36|Rep: Hydrolase, alpha/beta fold
family - Moritella sp. PE36
Length = 301
Score = 33.1 bits (72), Expect = 1.5
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +3
Query: 60 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 239
+P+ W LD + G+ + K+ LP+ IF + L G VL + KQ ++
Sbjct: 206 SPQFW-LDFMSGLITISQKSEIAKIPNQLPIYIFSGEQDPVGLQGKGVLAL-KQHIVNSG 263
Query: 240 GKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
+ YP G ++++ ANE+F + D
Sbjct: 264 CEQVQYKLYPGGRHEMLNESNANEVFNDVTD 294
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 2.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 128
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 2.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 75 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 236
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 571
Score = 32.3 bits (70), Expect = 2.6
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 340 PFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTS 197
P +K +NS S+DTTS NP+ Y S T T+ + +I STS
Sbjct: 301 PTYESVKSSNSGCKSLDTTSYNPSAYKISDATTCETINEKETSISSTS 348
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 32.3 bits (70), Expect = 2.6
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 111 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 287
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 288 VSIEKANELFRLIYDVKGRFTI 353
+ E+ +E + IYD+ R T+
Sbjct: 375 IPKEELSEKEKEIYDLIARRTL 396
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 2.6
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1;
Lactobacillus plantarum|Rep: Integral membrane protein -
Lactobacillus plantarum
Length = 1106
Score = 31.9 bits (69), Expect = 3.5
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -3
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
GS TFP + + F + LP++ + FR+ +T G S W + T SL
Sbjct: 1019 GSGGTFPMEITNKFFNAIHPYLPLTYSIQAFRQALTGGWGSGIFWSSIVVLAGITIVSLG 1078
Query: 79 NIHALGAF 56
+ A F
Sbjct: 1079 LLWASMVF 1086
>UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep:
POM121-like protein 2 - Mus musculus (Mouse)
Length = 972
Score = 31.9 bits (69), Expect = 3.5
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 277 NPAGYVGSV-RTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPV 116
NP +V R FP M+R + SLP + S +R I S +H R+ W PV
Sbjct: 66 NPTAFVSEAWRRFP---MKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPV 117
>UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECB7B2 UniRef100 entry -
Gallus gallus
Length = 178
Score = 31.5 bits (68), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 181 YLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSL-SNIHALGAFKRFKCFFG 32
YL + +++I+S + + WG ++TPPSL + L A + F C +G
Sbjct: 6 YLEKQQQRISSHWAALAQWGGHRSSESHTPPSLWLKVCTLNALQAFPCVWG 56
>UniRef50_Q55CU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1244
Score = 31.5 bits (68), Expect = 4.6
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 150 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRL 323
+ IF ++++K+ N +L I+ I + + + P P GF+ V+ I KA LF+L
Sbjct: 250 IFIFAKDKIKFFKKKNTILDIITIVPILIT-MIPSIPVTPLGFLRVLRILKAPRLFKL 306
>UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1;
Thermococcus kodakarensis KOD1|Rep: Putative
uncharacterized protein - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 164
Score = 31.5 bits (68), Expect = 4.6
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI-YDVK 338
+++RLI ++GKV+ AGF D V I K EL +LI YD K
Sbjct: 70 MRKRLIMLEGKVKHAEAGYAGFFDRVKI-KEKELEKLIEYDAK 111
>UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like
protein kinase 23 precursor; n=1; Arabidopsis
thaliana|Rep: Putative cysteine-rich receptor-like
protein kinase 23 precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 830
Score = 31.5 bits (68), Expect = 4.6
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 247 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
TFP ST M T+LST S P ++Y + F+ T+GKH + G RG +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204
>UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1072
Score = 27.9 bits (59), Expect(2) = 4.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 105 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 269
P PST PH L+ +PL + + ++ L L+++ + PT P
Sbjct: 842 PHPSTSPHSLQVLIPLQVLIPLQVLIPLQVLTTLQVLTSLQVLTPSTSPRPPTSP 896
Score = 22.2 bits (45), Expect(2) = 4.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 102 APRPSTGPH 128
+P PSTGPH
Sbjct: 805 SPHPSTGPH 813
>UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Thermotoga maritima
Length = 239
Score = 31.1 bits (67), Expect = 6.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 189 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 299
T EV K++KQ + V+G+V DP +P D V+++
Sbjct: 14 TRKEVKKLIKQGRVTVNGRVVLDPGHPVLENDAVALD 50
>UniRef50_Q65LR0 Cluster: YhgE; n=1; Bacillus licheniformis ATCC
14580|Rep: YhgE - Bacillus licheniformis (strain DSM 13
/ ATCC 14580)
Length = 720
Score = 31.1 bits (67), Expect = 6.1
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = -3
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHS 137
GS TFP L+ + F ++ ++LP++ ++ +R I+SG ++
Sbjct: 642 GSGGTFPLALVPKFFQVIHSALPMTYSIAGYRAVISSGDYA 682
>UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomonas
sp. SKA58|Rep: TonB-dependent receptor - Sphingomonas
sp. SKA58
Length = 810
Score = 31.1 bits (67), Expect = 6.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 349 VNLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR--RCFTILSTSL 194
VN T ++ F ++ D SIN GY+G + F + + R T+ +T L
Sbjct: 442 VNYSLTERLRVTGGFRYTWDKRSINRMGYIGGIPGFSGSFVSNGRLITLPATGL 495
>UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 654
Score = 31.1 bits (67), Expect = 6.1
Identities = 26/93 (27%), Positives = 40/93 (43%)
Frame = -3
Query: 322 KRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGK 143
+R++ S +T+ +P G + S P+ +R F LS S + ++T GK
Sbjct: 286 RRHDYDVQSTETSLSSPRGLLKSPIPPPTVTVRSEFPTLSRSRQQQSLTCLITVEVTEGK 345
Query: 142 HSRSLWGPVEGRGAYTPPSLSNIHALGAFKRFK 44
P + RG PP S A G+F R K
Sbjct: 346 WRAD---PEDMRGVAPPPVPSIASATGSFSRGK 375
>UniRef50_A7EU93 Cluster: Putative uncharacterized protein; n=2;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1096
Score = 31.1 bits (67), Expect = 6.1
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = -3
Query: 313 NSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPV-SAYLSRFRRKITSGKHS 137
+S AFS D T + Y ++R + + T+ S V S S K+ SG
Sbjct: 948 SSVAFSPDGTKVASGSYDQTIRLWDTITGESLQTLEGHSRSVGSVAFSPDGTKVASGSRD 1007
Query: 136 RS--LWGPVEGRGAYTPPSLSNIHALGAFKRF 47
+ LW + G + + S + A AF+R+
Sbjct: 1008 ETIRLWDTITGESLQSLKNHSGLEASSAFERY 1039
>UniRef50_Q05223 Cluster: Major head protein Gp17; n=5;
Siphoviridae|Rep: Major head protein Gp17 -
Mycobacteriophage L5
Length = 326
Score = 30.7 bits (66), Expect = 8.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 307 FAFSMDTTSINPAGYVGSVRTFPSTLMRRCF---TILSTSLPVSAYLSRFRRKIT 152
F S +T NPA Y+G++RT +T F I T P +L++ ++++
Sbjct: 104 FVASAETVRANPANYLGTMRTKVATAFAMAFDNAAINGTDSPFPTFLAQTTKEVS 158
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,918,615
Number of Sequences: 1657284
Number of extensions: 7075022
Number of successful extensions: 20964
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 20517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20954
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -