Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P09
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   2.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   3.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   5.1  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    20   6.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.8  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  LFNMARGPKKHLKRLNAPKAWMLDKLG 92
           +  + R P +++K++N   A  LD+ G
Sbjct: 606 VIGIGRSPDQNVKKINLKHALDLDRQG 632


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLG 92
           + R P +++K++N   A  LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRRG 632


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 79  WTSWAACTRRGPR 117
           W +W  CTR   R
Sbjct: 190 WPAWVYCTRYSDR 202


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 186 LTGNEVLKIVKQRLIK 233
           L  N++LK++++ L+K
Sbjct: 392 LQQNKILKVIRKNLVK 407


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 151 SGKHSRSLWGPVEGRGAY 98
           +GKH R +  P + +G Y
Sbjct: 347 AGKHLRKVGDPSKRKGTY 364


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 171 RLKYALTGNEVLKIVKQRLI 230
           R K+ LTG   L   K RL+
Sbjct: 202 RTKHRLTGETRLSATKGRLV 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,698
Number of Sequences: 336
Number of extensions: 1620
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)