Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P09
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 170 3e-43
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 0.98
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 0.98
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 0.98
U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical pr... 27 3.0
AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 27 3.0
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 27 3.9
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 27 3.9
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 26 6.9
U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf (tbp-associ... 26 9.1
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 170 bits (413), Expect = 3e-43
Identities = 76/111 (68%), Positives = 90/111 (81%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTIHR 359
KI+ QR+++VDGKVRT +P GFMDVV+IE+ NE FR++YD KGR+ +HR
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHR 112
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 0.98
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 0.98
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 245 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 153
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 334 TSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 224
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
>U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical
protein F36D4.4 protein.
Length = 472
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 328 YIKRNNSFAFSMDTTSINPAGYVGSV 251
YI+ N F+FSM TT++ G++G++
Sbjct: 10 YIELNCKFSFSMATTAVFLCGHLGAL 35
>AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein45 protein.
Length = 328
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -3
Query: 346 NLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 167
N YI+ + F +D+T N G + SV ++ +T TI +++ +++ S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 299 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 322 KRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSA 182
KR+N AF+ T + + V + R PST R T + P+ A
Sbjct: 534 KRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTAIEIEQPIEA 580
>U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 10,
isoform b protein.
Length = 179
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 99 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 266
Y RP+ P P V LR+ L LTGN+ + V++ L V D T+
Sbjct: 26 YFQRPAAAPQVYSTLEPSVQNLRSSLHKPLTGNQ-QQFVQKTLENVQKNPSQDDTH 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,295,726
Number of Sequences: 27780
Number of extensions: 156838
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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