Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P09
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 171 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 272
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 189 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 347
           T +++    + R+ ++   VRT    P GF D+V  +K  E   L   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 332
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 30  GPKKHLKRLNAP 65
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 339 LSHHILNGITHLLSQWIQR 283
           L+ H  +  TH+++ W++R
Sbjct: 325 LNVHFRSPQTHVMAPWVRR 343


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 109  RGAYTPPSLSN 77
            RG YTPP  +N
Sbjct: 994  RGRYTPPQPAN 1004


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,065
Number of Sequences: 438
Number of extensions: 1982
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)