Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P08
(206 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 48 2e-07
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 48 2e-07
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 0.45
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 2.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 2.4
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 3.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 3.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 4.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 5.5
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 23 7.3
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 22 9.6
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 22 9.6
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 22 9.6
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 9.6
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 22 9.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 22 9.6
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 48.0 bits (109), Expect = 2e-07
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +1
Query: 85 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLV 198
++ ARP VS+YS K V+ ++ LPFVFKAPIRPDLV
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLV 37
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 47.6 bits (108), Expect = 2e-07
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +1
Query: 85 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLV 198
++ ARP VS+Y+ K V+ +L LPFVFKAPIRPDLV
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLV 37
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 0.45
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 203 SLTRSGLMGALNTNGRGSEAPATTSLF 123
S T SGL GA NTN + + T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 149 EAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKH 42
++ A S F EY + +++ L SL +SYSS +
Sbjct: 650 DSNADESQFLEYANDSPNSSESLESLNNQSYSSSPY 685
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 206 TSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLIS 75
+SLT S + + +TN S +P ++SL S + A+ S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 73 SEMSLSVARPLVSVYSE 123
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 118 NTPTLKVGLLTDSFRFISEVIPPKN 44
N+P+ L SF+F++ ++P +N
Sbjct: 1952 NSPSTNTELCQASFKFLASILPYEN 1976
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 18 GWSLPPSIVFFGGITSL 68
GWSLP +++ F +T++
Sbjct: 1741 GWSLPKTVLAFCAVTAI 1757
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 106 LKVGLLTDSFRFISEVIPPKNTIDGGKDHPP 14
+ VG + F ++P K T+DG K PP
Sbjct: 591 VNVGSVAFDATFFPSLLP-KKTMDGSKIEPP 620
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 48 FGGITSLIKRNESVSSPTFS 107
F + S I RNES +P+FS
Sbjct: 183 FNVVYSRILRNESFQTPSFS 202
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = -1
Query: 77 SLYQRSYS--SKKHYRRWQ 27
S++ R++S +K YRRWQ
Sbjct: 108 SVFLRAFSETNKSRYRRWQ 126
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 160 GGGAKPLRRPHSSPNTPTL 104
G A P +PH+ PN L
Sbjct: 53 GEAATPKHKPHAGPNAAPL 71
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = -1
Query: 77 SLYQRSYS--SKKHYRRWQ 27
S++ R++S +K YRRWQ
Sbjct: 108 SVFLRAFSETNKSRYRRWQ 126
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 22.2 bits (45), Expect = 9.6
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = -1
Query: 200 LTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKHYRRWQRP 21
L+RS LN +G E +EY + + ++ Y+SK QR
Sbjct: 216 LSRSPSRAVLNEDGNVDECAPPEPWENEYNEVLDDVENAVVGTSPLEYTSKPLAANRQRS 275
Query: 20 SA 15
+A
Sbjct: 276 TA 277
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = -1
Query: 77 SLYQRSYS--SKKHYRRWQ 27
S++ R++S +K YRRWQ
Sbjct: 108 SVFLRAFSETNKSRYRRWQ 126
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 22.2 bits (45), Expect = 9.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 155 GSEAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKHYRR 33
GSE +T S T ++GR+ R RSYS + Y R
Sbjct: 623 GSETGSTYSSSYSSTYSRGRSYSR----STRSYSKSRSYSR 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,926
Number of Sequences: 5004
Number of extensions: 13507
Number of successful extensions: 49
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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