Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P08
(206 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 43 3e-05
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.085
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.085
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 0.20
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 0.20
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 29 0.34
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 29 0.34
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 29 0.34
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 29 0.34
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 25 7.4
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 25 9.7
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL132948-12|CAD31814.1| 283|Caenorhabditis elegans Hypothetical... 25 9.7
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 25 9.7
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 94 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVN 201
ARPLV+VY EK E + + LP VF+ PIRPDLV+
Sbjct: 3 ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVS 37
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.085
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 179 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 66
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.085
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 179 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 66
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 191 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 96
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 191 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 96
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 73 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVND 204
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSD 151
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 73 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVND 204
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSD 217
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 73 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVND 204
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSD 151
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 73 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVND 204
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSD 217
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 139 RRPHSSPNTPTLKVGLLTDSFRFISEVIPPKNTIDGGKDHPPPR 8
R+ H S N+P DS S P +N D KD+ PPR
Sbjct: 109 RQRHDSDNSPPRPSRKRNDSDN--SPPRPSRNRHDSDKDNSPPR 150
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 106 LKVGLLTDSFRFISEVIPPKNTIDGGKDHPPPRA 5
+ +G+++ FR S ++P IDG + RA
Sbjct: 1734 IPIGVVSSEFRNFSTIVPADPAIDGSQVQNTQRA 1767
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
protein C35C5.6 protein.
Length = 1224
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 185 LMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLISLYQR 63
++G TNG+G A +T E TD++ ++++ + Y +
Sbjct: 79 VIGVGFTNGQGEPADKSTRASRESTDSEVSESEQISNAYNK 119
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 173 LNTNGRGSEAPATTSLFSEY 114
LN+NG +E P TSL S +
Sbjct: 283 LNSNGNSAEFPIETSLISAF 302
>AL132948-12|CAD31814.1| 283|Caenorhabditis elegans Hypothetical
protein Y39B6A.16 protein.
Length = 283
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 122 SEYTDTKGRATDRLISLYQRSYSSKKHYRR 33
S + + K A DRL Y + K+HY++
Sbjct: 100 STFLERKVAAFDRLRDAYSEEKTKKEHYKK 129
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 107 TKGRATDRLISLYQRSYSSKKHYRRWQRP 21
+K R TD + +YQRSY+ Y + P
Sbjct: 1772 SKDRETDSVRGIYQRSYTRLLPYLHKETP 1800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,787,144
Number of Sequences: 27780
Number of extensions: 80802
Number of successful extensions: 241
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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