Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P06
(249 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 46 7e-07
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 42 9e-06
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 39 8e-05
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 39 8e-05
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.001
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 32 0.013
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 0.63
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 1.9
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 1.9
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 23 4.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 23 7.8
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 7.8
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 23 7.8
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 23 7.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 23 7.8
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 46.0 bits (104), Expect = 7e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 3 TRVGFKMLQKLGWTEGQGLGAEGSGIVDPINKANQPVANLGLGA 134
T G KML+K+G+ +GQGLGA GI +P+ +P +GLGA
Sbjct: 116 TGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRP-ERVGLGA 158
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 42.3 bits (95), Expect = 9e-06
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 9 VGFKMLQKLGWTEGQGLGAEGSGIVDPIN 95
V KMLQ+ GW EGQGLG GI++P++
Sbjct: 255 VALKMLQRCGWKEGQGLGQHNQGIINPLH 283
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 39.1 bits (87), Expect = 8e-05
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 12 GFKMLQKLGWTEGQGLGAEGSGIVDPI 92
G ++L+ +GW+ G+GLG+E G+VDP+
Sbjct: 149 GKQLLEMMGWSRGKGLGSENQGMVDPV 175
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 39.1 bits (87), Expect = 8e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 RVGFKMLQKLGWTEGQGLGAEGSGIVDPINKANQPVANLGLGA-STSDVVSPEDDEFDAY 182
R+GFK+L GW G GLG + G + I K + LG+GA +T+D+ EF+A
Sbjct: 27 RLGFKLLSSYGWVNGNGLGEKQHGRIHNI-KVSLKDDTLGIGAKATNDLEWSGLGEFNAI 85
Query: 183 RKRM 194
R+
Sbjct: 86 FGRL 89
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 35.5 bits (78), Expect = 0.001
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 TRVGFKMLQKLGWTEGQGLGAEGSGIVDPINKANQPVANLGLGASTSDV 149
+ V KML +GW +G GLG +GI + I + + +GLG S +
Sbjct: 491 SNVSMKMLNSMGWNKGSGLGTNENGIKEAI-QPTMYLPGVGLGNKGSKI 538
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 31.9 bits (69), Expect = 0.013
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 GFKMLQKLGWTEGQGLG-AEGSGIVDPINKANQPVANLGLG 131
G ++L+KLGW G+GLG E G D + +A V+ GLG
Sbjct: 656 GRRLLEKLGWYAGKGLGHPENEGSKDSL-RAIVKVSRSGLG 695
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 0.63
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 9 VGFKMLQKLGWTEGQGLGAEGSGIVDPINKANQPVANLGLGASTSDVVSPE 161
+G KML+ LGW + + G D NQ A G+G DV E
Sbjct: 140 IGEKMLKNLGWNGHDFVISPFQGYYDDTKLTNQ--AYHGIGYQADDVFQLE 188
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 1.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 138 TSDVVSPEDDEFDAYRKRMMLAYR 209
T+D + DD FD YR M A++
Sbjct: 749 TADYLEILDDRFDEYRSLMKAAFK 772
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 1.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 48 GQGLGAEGSGIVDPINKANQPVANLGL 128
G+G+G+ GS + + AN+ +A LGL
Sbjct: 95 GRGMGSSGSAAIAGVMLANE-IAKLGL 120
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 23.4 bits (48), Expect = 4.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 135 STSDVVSPEDDEFDAYRKRMM 197
+T++ +SPE DA+RK+++
Sbjct: 274 NTAEGISPERKSADAFRKKLI 294
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 22.6 bits (46), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 139 VDAPRPRLATGWLALLMGSTIPEPSAPNP*PSVQ 38
V P P+ +T L GSTI + P P+ Q
Sbjct: 41 VSIPTPKPSTPLSTLTNGSTIQQSMTNQPEPTSQ 74
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 22.6 bits (46), Expect = 7.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 51 QGLGAEGSGIVDPINKANQPVANLGLGASTSDVVSPEDDEFDAYRKRMML 200
+ +G +G GI N + PVA+ + +T+ ++P YR L
Sbjct: 233 RNIGYKGQGICVYTNDSRIPVADDHVIVNTTSKINPNITSVFNYRDNAFL 282
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 90 WDPQYRNLRHLTLDL---QSNQVFAAF*NPPS 4
WDPQ+R+++ + + + + QV F N PS
Sbjct: 500 WDPQFRDVKVIQVAMLMDEIAQVATKFRNMPS 531
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 109 GWLALLMGSTIPEPSAPNP*PSVQPSFCSI 20
G+ A+L G + +PSA V P F I
Sbjct: 106 GYSAILFGKQLTDPSAHYYSLEVNPKFAKI 135
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 22.6 bits (46), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 3 TRVGFKMLQKLGWTEGQGLGAEGSGIVDPINKANQPVANLGLGASTSDVVSPEDDE 170
T G K L E Q L A G+ I+ + P N G + + ++PEDDE
Sbjct: 327 TSNGRKRLTSPEIWELQQLAASGA-----ISATDIPELNDGFNTNNAAEINPEDDE 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,109
Number of Sequences: 5004
Number of extensions: 12986
Number of successful extensions: 44
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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